Lysobacter arenosi: HIV01_004640
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Entry
HIV01_004640 CDS
T07237
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lare
Lysobacter arenosi
Pathway
lare03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HIV01_004640 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lare03400
]
HIV01_004640 (ligD)
Enzymes [BR:
lare01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HIV01_004640 (ligD)
DNA repair and recombination proteins [BR:
lare03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HIV01_004640 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QSX75814
LinkDB
All DBs
Position
complement(982106..982966)
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AA seq
286 aa
AA seq
DB search
MTPRRLTSPERVVFEDAGITKGDVAAYYAVVSRWMLPGVVGRPLSLLRCPDGAGASCFFQ
KHHADSLGAGVHSITLDEASGTGEYLYIDDVDGLLDLVQMNTLEFHPWGSRTNDVEHPDR
LVFDLDPDEGIAWSAVKSAARDIRDRLADVKLRSWVRLSGGKGLHVVVPVRPKADWAQTK
AFCENFAGQLVAETPKRFVATASKAAREGRIFIDWLRNTRGATSVASWSLRARAGAPVCM
PLSWEELAQVRKPSAYDMRKAARRADSLKEDPWEGFSRVRQIIPAN
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgaccccacgcagattgaccagtcccgagcgcgtcgtcttcgaagacgccgggatcacc
aagggcgacgttgcggcgtactacgccgtcgtctcccgctggatgctgccaggcgtggtc
ggacgtccgctttcgctgctgcgttgcccggacggggccggcgcaagttgcttcttccag
aagcaccatgccgactcgctcggtgcgggcgtgcattcgatcacgctggacgaagcctct
ggaacgggcgagtacctgtatatcgacgacgtcgacggcctgctcgacctggtgcagatg
aacacgctcgagttccatccctggggctcgcgaacgaacgatgtcgaacatcccgatcgt
ctcgtcttcgacctggatccggatgagggaatcgcgtggagcgcggtgaagtcggccgct
cgcgacattcgcgaccgcctggccgacgtgaagctgcgcagctgggtgcgcctgtctggc
ggcaaggggctgcatgtcgtcgtgcccgtgcgtcccaaggccgattgggcacagaccaag
gcgttctgcgaaaacttcgccggccaactggtcgccgaaacgccgaagcgcttcgtggcc
acggcatcgaaagccgcgcgcgaagggcgcatcttcatagactggctgcgcaacacgcgt
ggcgccaccagcgtcgccagctggtccttgcgcgcgcgcgcaggtgcgccggtatgcatg
ccgctgagctgggaggaactggcgcaggtccgcaagccctcggcctacgacatgcgcaag
gcggcgcgccgcgccgattcgctcaaggaggatccgtgggaggggttctcgcgcgtgcgc
cagatcattcctgcgaattga
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