Lysobacter arenosi: HIV01_006440
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Entry
HIV01_006440 CDS
T07237
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lare
Lysobacter arenosi
Pathway
lare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIV01_006440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lare03019
]
HIV01_006440
03009 Ribosome biogenesis [BR:
lare03009
]
HIV01_006440
Enzymes [BR:
lare01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HIV01_006440
Messenger RNA biogenesis [BR:
lare03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HIV01_006440
Ribosome biogenesis [BR:
lare03009
]
Prokaryotic type
rRNA helicases
HIV01_006440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
Flavi_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QSX76130
UniProt:
A0ABX7RD99
LinkDB
All DBs
Position
1366518..1368638
Genome browser
AA seq
706 aa
AA seq
DB search
MSAETPNTPSTDPSADTPSIKFSDLGLPEPLMRALADVGYESPSPIQAATIPPLLEGRDV
LGQAQTGTGKTAAFALPVLARIDPNQRAPQTLVLAPTRELAIQVAEAFQKYAHHLPGFQV
LPIYGGQSYYPQLQALKRGVQVIVGTPGRVIDHLERGSLDLSQLRCLVLDEADEMLRMGF
IDDVEAVLKKTPETRQVALFSATMPAPIKRIAQTYLKDPVEIAIKSKTSTAANIRQRYWA
VSGVHKLDAITRILEAEPFDAMIVFARTKLATEELADKLAARGIAAAAINGDVVQAQREK
TIQNLKDGKIDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAI
LFVTPRERGMLRAIERATRQPIEQMQLPTVETVNEQRVNRFLGRITTALESSDVSQFRDL
VERYEREQNVPAVEIAAALAKLVQGDMPLLLDVTAERLRPHTPSFDRPERGAREQSPRDR
YERGPRDGQREPRRERDAAPRPPREFTPREPQQRDERPRHADRQFTPPAAGERSFERPSV
NAAESMFADEGPAQHRHEPREPREPRGERAPEVGMETFRIEVGHTHGVKPGNIVGAIANE
AELESRFIGRIDIRDDFSLIDLPEGMPREVMDHLKRVRVAGQQLRISRADEDTGHGQRPH
GRYGDAPRSFDDDRRPPPRGPRPHSGHKPHGAGPHGGGPRKPFKPR
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgaaacgcccaacaccccttccacggacccgtccgcggacaccccgtccatc
aaattctccgacctgggcctgcccgaaccgctgatgcgggcactggccgatgtcggctac
gagtcgccctcgccgatccaggcggccaccattccgccgctgctggaaggccgcgacgtg
cttggccaggcccagaccggcaccggcaagaccgccgcgttcgccctgccggtgctggcc
cgcatcgacccgaaccagcgcgctccgcagacgctggtgctggcgccgacgcgtgagctg
gcgatccaggtcgccgaggcgttccagaagtacgcccatcacctgcccggcttccaggtc
ctgccgatctacggcggccagagctattacccgcagttgcaggcgctcaagcgtggcgtg
caggtgatcgtcggcacgcccggccgcgtcatcgaccatctcgaacgcggttcgctcgac
ctgtcgcagctgcgctgcctggtcctggacgaagccgacgagatgctgcgcatgggcttc
atcgacgacgtcgaggcggtgctgaagaagaccccggagacgcgccaggtcgcgctgttc
tcggcgaccatgccggcgccgatcaagcgcatcgcccagacgtacctgaaggacccggtc
gagatcgcgatcaagtccaagacctcgaccgcggccaacatccgccagcgctactgggcg
gtcagcggcgtgcacaagctcgacgcgatcacgcgcatcctggaagccgagccctttgac
gcgatgatcgtgttcgcccgcaccaagctggcgaccgaggaactggccgacaagctggcc
gcacgcggcattgccgccgccgcgatcaatggcgacgtggtccaggcgcagcgcgagaag
accatccagaacctcaaggacggcaagatcgacgtgctggtcgccaccgacgtcgccgcg
cgcggcctcgacgtggaacgcatcagccacgtgctgaactacgacatcccgtacgacacc
gaaagctacgtgcaccgcatcggccgcaccggccgtgccggtcgcaagggcgaggcgatc
ctgttcgtcaccccgcgcgagcgcggcatgctgcgcgcgatcgagcgcgccacgcgccag
ccgatcgagcagatgcagctgccgaccgtggaaacggtcaacgagcagcgcgtcaaccgc
ttcctcggccgcatcaccacggcgctggaatcgtcggatgtgagccagttccgcgacctg
gtcgaacgctacgagcgcgagcagaacgtgccggcggtggaaatcgccgctgccctcgcc
aagctggtgcagggcgacatgccgctgctgctggacgtcaccgccgagcgcctgcgtccg
catacaccgagcttcgaccgccccgagcgcggtgcgcgcgagcaatcgccgcgcgatcgc
tacgagcgtggcccgcgtgacggccagcgcgagccccgccgcgagcgcgatgccgcgccg
aggccgccgcgtgagttcacgccgcgcgagccgcagcagcgcgacgagcgtccgcgtcat
gccgatcgccagttcacgccgccggccgccggtgagcgttcgttcgagcgcccgtcggtc
aacgccgccgagtcgatgttcgccgacgaaggtccggcgcagcaccgccatgaacctcgc
gagccgcgcgaaccacgcggcgaacgcgcgccggaagtcggcatggaaacgttccgcatc
gaggtcggccacacgcacggcgtcaagccgggcaacatcgtcggcgccatcgccaacgag
gccgagctggaaagccgcttcatcggccgcatcgacatccgcgacgacttcagcctcatc
gatctgcccgaaggcatgccgcgcgaagtgatggaccacctcaagcgcgtgcgcgtcgcc
ggtcagcagctgcgcatcagccgcgccgacgaggacaccggccacggccagcgtccgcac
ggtcgctacggcgatgcaccgcgcagcttcgacgacgatcgccgaccgccgccgcgcggt
ccgcgtccgcacagcggccacaagcctcatggggccgggccgcatggcggcggtccgcgc
aagccgttcaagccgcgctga
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