Lysobacter arenosi: HIV01_007300
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Entry
HIV01_007300 CDS
T07237
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lare
Lysobacter arenosi
Pathway
lare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIV01_007300 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lare03019
]
HIV01_007300 (rnr)
03016 Transfer RNA biogenesis [BR:
lare03016
]
HIV01_007300 (rnr)
Enzymes [BR:
lare01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HIV01_007300 (rnr)
Messenger RNA biogenesis [BR:
lare03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HIV01_007300 (rnr)
Transfer RNA biogenesis [BR:
lare03016
]
Prokaryotic type
tRNA degradation factors
HIV01_007300 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_IclR
HTH_20
HTH_11
HTH_AsnC-type
PF0610-like_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QSX76285
UniProt:
A0ABX7RF01
LinkDB
All DBs
Position
complement(1550992..1553412)
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AA seq
806 aa
AA seq
DB search
MSKKPPSRGKSGTKSPSRKTSGAPARSGKAGGAKKPAKRPGWMPEPPPHLPARSGTGGGG
PGGFHDPYAEREAARYAEPIASREVILQMLADGDGPMPAEELAERLGLAAPERFDALGKR
LGAMVRDGQLLRNRMGEFLPAQQLALVPGVVIANPDGFGFLRLEGGGDDLFLPPMEMRKA
MHGDRVLASVTGVDRRGRREGAITRVLERRLNRLIGRFVLEAGISYVVPDDRRIQRNVQI
PPDERLGAQNGQLVVCELLQAPDPQRPPIGRILAVLGDRLTASLAVQAAIHGHEIPHEFP
QEVLDEAAAVPLTVDAATAAQRVDLRALQLVTIDGEDAKDFDDAVYCEPNRDGFRLIVAI
ADVSSYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLNPKVDRLCFVCDMQI
DRNGEVGESKFYEAVMNSHARLTYTQVWNAVGEGIADDAREEALGQIGSLLPNIQRLHQL
YQILSKARERRGAIEFESSEVRFVLGAKGEVVQAGMLQRNDAHKLIEECMIAANVEAAKY
LLAHHVPAPYRIHERPPEQKYADLQEFLKEFKLRMPPWAKVEPRDFTILLKKVRERADAA
LIESVLLRSQSLAVYSPDNVGHFGLALEAYAHFTSPIRRYPDLLVHRAIKYALTGGRPEK
YRYSPSEMAALTLQCSERERRADEAEREVDERYRAAWMEQHVGGEFDGVISGVTSFGLFV
ELDNSKVNGLIHVTQLPHDYYHFDPIRKTLAGERTGREFRLGDRVSIVVMKASVEDRKID
FRLVEERGAKPLPPRGQPAKRTKKPY
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaaacccccgagtcgcggcaagtccggcaccaagtccccctcgcgcaagacc
tccggcgctcccgccaggtcgggcaaagccggaggggcaaagaagcccgccaagcgccct
ggctggatgcctgaaccgcccccgcatttgcccgcccgcagcggaaccggtggcggtggc
cccggtggtttccacgacccttatgccgagcgcgaagccgcccgctacgccgagccgatc
gccagccgcgaagtgatcctgcagatgctggccgatggcgatggcccgatgccggccgag
gaactggccgaacgcctgggcctggccgcaccggaacgattcgacgcactgggcaagcgc
ctgggtgcgatggttcgcgacggccagctgctgcgcaaccgcatgggcgaattcctgccg
gcgcagcaattggcgctggtgccgggcgtggtgatcgccaaccccgacggtttcggattc
ctgcgcctggaaggcggcggcgacgacctgttcctgccgccgatggaaatgcgcaaggcc
atgcacggcgaccgcgtactcgccagcgttaccggcgtcgaccgccgtggccgccgcgaa
ggcgcgatcacgcgcgtgctggaacgtcgcctcaatcgtttgatcggtcgcttcgtgctc
gaggccggcatcagctatgtggtgccggacgaccgccgcatccagcgcaacgtgcagatc
ccgccggacgagcgcctgggcgcgcagaacggccagctggtggtctgcgaactgctgcag
gcacccgatccgcaacggccgccgatcggccgcatcctggccgtgctcggcgatcggctc
acggcctcgctggcggtgcaggcggcgatccacggccacgaaattccgcacgagttcccg
caggaagtgctggacgaagccgcggccgtgccgctgacggtcgacgccgccaccgcggcg
cagcgcgtcgacctgcgcgcgctgcaactggtcaccatcgacggcgaggacgccaaggac
ttcgacgacgcggtctattgcgagcccaaccgcgacggcttccgcctgatcgtcgccatc
gccgacgtttccagctacgtacgtcccggcacgccgctggacgacgaagcgcagaagcgc
gcgacctcggtctacttccccggcttcgtcgtgccgatgctgccggagacactgtccaac
ggcatctgctcgctcaacccgaaggtcgaccgcctgtgcttcgtctgcgacatgcagatc
gacaggaatggcgaagtcggcgagtcgaagttctacgaagcggtgatgaactcgcacgcg
cgcctgacctacacccaggtctggaatgcggtcggcgagggcatcgccgacgacgcgcgc
gaggaagcactgggccagatcggctcgctgctgcccaacatccagcgcctgcaccagctc
taccagatcctgtcgaaggcgcgcgagcgccgcggcgcgatcgaattcgagtccagcgaa
gtgcgcttcgtcctcggcgcgaagggcgaggtcgtccaggccggcatgctgcagcgtaac
gacgcgcacaagctgatcgaggaatgcatgatcgcggcgaacgtggaggcggccaagtac
ctgctggcccatcacgtgccggcgccttatcgcatccacgagcgcccgccggagcagaag
tacgccgacctgcaggagttcctgaaggaattcaagctgcgcatgccgccgtgggcgaag
gtcgagccgcgcgacttcaccatcctgctgaagaaggtgcgtgagcgcgccgatgccgcg
ctgatcgagtcggtgctgctgcgcagccagtcgctggcggtgtactcgcccgacaacgtc
ggccacttcggcctggcgctggaggcgtatgcgcacttcacctcgccgatccgccgctac
cccgacttgctggtgcaccgcgcgatcaagtacgcgctgaccggcggtcgtcccgagaag
taccgctactcgcccagcgagatggcggccctgacgctgcaatgctccgagcgcgagcgc
cgtgccgacgaggccgagcgcgaggtcgacgagcgctaccgtgccgcgtggatggagcag
cacgtcggcggcgagttcgacggcgtcatcagcggcgtcaccagcttcggcctgttcgtc
gaactcgacaactccaaggtcaacggcctgatccacgtgacccagctgccgcacgactat
tatcatttcgatccgatccgcaagaccctcgccggcgagcgcaccggtcgcgagttccgc
ctaggcgaccgcgtcagcatcgtggtgatgaaggccagcgtcgaggaccgcaagatcgac
ttccgcctggtcgaggagcgcggcgccaagccgttgccgccgcgcggacagccggctaaa
cgcaccaagaaaccctactga
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