Lysobacter arenosi: HIV01_007555
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Entry
HIV01_007555 CDS
T07237
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lare
Lysobacter arenosi
Pathway
lare03030
DNA replication
lare03430
Mismatch repair
lare03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HIV01_007555 (dnaE)
03430 Mismatch repair
HIV01_007555 (dnaE)
03440 Homologous recombination
HIV01_007555 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lare03032
]
HIV01_007555 (dnaE)
03400 DNA repair and recombination proteins [BR:
lare03400
]
HIV01_007555 (dnaE)
Enzymes [BR:
lare01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HIV01_007555 (dnaE)
DNA replication proteins [BR:
lare03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HIV01_007555 (dnaE)
DNA repair and recombination proteins [BR:
lare03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HIV01_007555 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QSX76326
LinkDB
All DBs
Position
1615602..1619120
Genome browser
AA seq
1172 aa
AA seq
DB search
MTAPRFVHLHLHSEYSLADSTIRIGEMVKRCVALSQPAVALTDLDNLFATVKFYKAAEGA
GIKPIIGADVGLADGNETASHMTLLCRDRNGYLTLSRLLSRAWMEGHRTDGVALRPEWLR
EDNAGLFALVGRNSLAGRMAVGGRHELAEAWLADWRGSFGERLHLELTRTGRDGEDAFNS
FALHAASTRGIPVIASNDVRFLDRDGFEAHEARVCIASGRVLDDPKRPKDYTEEQYLKSS
QEMAALFADIPDAIDNAVSLATRCNVEMKLGEYALPAFPVPSEHTIESWLRNSAREGLDK
RLEKAPLAPGKTREEYDARLEIELDVIIKMGFPGYFLIVADFINWAKDHDIPVGPGRGSG
AGSLVAWALGITDLDPLPYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRD
RVSQIITYGTMAAKAVVRDSGRVLGHPYGFVDGIAKLIPNTLGISLDDALGESEAAKSDN
NLASPELIQRYHAEEDVRDLLDLARSLEDLTRNAGKHAGGVVIAPSPLSDFCPLFAEHDG
EGRGKSPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINKRRATAGEPALDIATLP
LDDKLSYELFARGDTVAVFQFESRGMRELLKRARPDTFEDIIALAALFRPGPLGSGMDRE
WVDRKHGNTEVSYPHESLEPVLSPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKK
KPEEMAKERAKFEAGCAERGIAARQASPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLK
VHYPSEFMAAVLSSDMDNTDKVTSFLDECRVMGLTVLRPDVDESAYMFEAKDATTIRYGI
GAVKGVGRGACEAIVEARRAGPFADLLDFAKRVDSGKLNRRALEALTQAGALDKLGKNRA
SLMLQLPEVLKATDQLAREREAGQVSLFGGFDTTTPALHIDLPETDEWPLTQILNGERDT
LGHYLSGHPFDPYRDEVRGLIGNDLAGLEKIWENRPEPARGSWRQEVETVVAGQVVGLRK
KGDSQMFVQIEDGRGRIECAFFNETYSEFAQLLVRDRLLVIQGNLREDTFSGGFALRAVR
CWDYEQVCTRNAQRLSLRLDLREPGTWQRVDTVLAGNRPGSTPIRLDLLVRKGSAGMLDL
NGTQSVRIDAELASKLRSTPGVRAVKVTLAKP
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaccccgtttcgttcatctccacctgcacagcgagtactccctcgccgactcg
acgatccgcatcggcgagatggtcaaacgctgcgtggcgctgtcgcagccggcggtcgcg
ctgaccgacctcgacaacctgttcgccacggtcaagttctacaaggcggccgaaggcgcc
ggcatcaagccgatcatcggtgccgacgtcggcctggccgacggcaacgaaaccgcttcg
cacatgaccctgctgtgccgggaccgcaacggctacctgacgctgtcgcgcctgctcagc
cgcgcctggatggaagggcaccgcaccgacggcgtcgccctgcgcccggaatggctgcgc
gaggacaacgccggcctgttcgccctggtcggccgcaatagcctggccggacgcatggcc
gtgggcggccgccacgaactggccgaggcctggctggccgactggcgcggctcgttcggc
gagcgcctgcacctggagttgacccgcaccggtcgcgacggcgaggacgcgttcaattcg
ttcgccctgcatgccgcctcgacgcgcggcatcccggtcatcgccagcaacgacgtgcgc
ttcctcgaccgcgacggcttcgaggcgcacgaggcacgcgtgtgcatcgcctccggtcgc
gtcctcgacgatcccaagcggcccaaggactacaccgaagagcagtacctgaagtcgtcg
caggaaatggcggcgctgttcgccgacatccccgacgcgatcgacaatgccgtctcgctg
gccacgcgctgcaacgtcgagatgaagctcggcgagtacgcgctgccggcgttcccggtg
ccgagcgagcacaccatcgaatcgtggctgcgcaacagcgcgcgcgagggcctggacaag
cgcctggagaaggcacctctcgcgccgggcaagacgcgcgaagagtacgacgcgcgcctg
gagatcgagctcgacgtcatcatcaagatggggttccccggctacttcctgatcgtggcc
gacttcatcaactgggccaaggaccacgacatcccggtcggcccgggtcgtggttccggt
gccggttcgctggtggcttgggcgctgggcatcaccgatctcgatcccctgccctacgac
ctgctgttcgagcgattcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgac
ttctgcatggaccgtcgcgacgaggtcatcgactacgtcgcgcgcaagtacggccgcgac
cgcgtcagccagatcatcacctacggcaccatggcggccaaggccgtggtgcgcgacagc
ggtcgcgtgctcggccatccgtacggcttcgtcgacggcatcgccaagctcattccgaac
acgctaggcatctcgctggacgatgcactgggcgaatcggaagcggccaagtccgacaac
aacctcgcctcgcccgagctgatccagcgctaccacgccgaagaggacgtgcgcgacctg
ctcgacctggcgcgcagcctcgaggacctcacccgcaacgccggcaagcacgccggcggc
gtggtgatcgcgccgagtccgctgagcgacttctgcccgctgttcgccgaacacgacggc
gagggtcgcggcaagagcccggtcacgcagttcgacaaggacgacgtcgaagccgtcggc
ctggtcaagttcgacttcctcggcctgcgcacgctgacgatcatcgactgggcggtgaag
gcgatcaacaagcgccgcgccaccgcgggcgagcctgccctcgacatcgccacgctgccg
ctcgacgacaagctcagttacgagctgttcgcgcgcggcgacacggtcgcggtgttccag
ttcgaatcacgcggcatgcgcgagctgctcaagcgcgcgcgccccgacaccttcgaggac
atcatcgcgctggccgcgttgttccgtcccggcccgctgggctcgggaatggaccgcgaa
tgggtcgaccgcaagcacggcaacaccgaagtctcctacccgcacgaatcgctggaaccg
gtgctgtcgccgacttacggcgtcatcgtgtaccaggaacaggtgatgcagatcgcccag
gtgctggccggctacacgctcggcggcgccgacatgctgcgtcgcgcgatgggcaagaag
aagcccgaggagatggccaaggagcgcgccaagttcgaggccggctgcgccgagcgtggc
attgccgcgcgccaggccagcccgatcttcgacttgatggagaagttcgccgagtacggc
ttcaacaagtcgcactcggccgcctatgcgctggtcgcctaccagaccgcctggctgaag
gtgcactacccgtcggagttcatggccgcggtgctgtcctcggacatggacaacaccgac
aaggtcacctccttcctcgacgaatgccgggtgatgggactgacggtgctgcgcccggac
gtcgacgagtcggcgtacatgttcgaggccaaggacgcgaccacgatccgctacggcatc
ggcgcggtgaaaggcgtcggccgcggcgcctgcgaagcgatcgtggaagcgcgccgcgcc
ggcccgttcgcggacctgctcgatttcgccaagcgcgtcgacagcggcaagctcaaccgc
cgcgcactggaggcactgacccaggccggcgcgctcgacaagctcggcaagaaccgcgcg
agcctgatgctgcagctgccggaagtgctcaaggccaccgaccagctggcgcgcgagcgc
gaggccggacaggtctcgctgttcggcggattcgacacgacgacgccggcgctgcacatc
gacttgcctgagaccgacgagtggccgctgacgcagatcctcaacggcgaacgcgacacg
ctcggccactacctcagcggccacccgttcgatccgtaccgcgatgaagtccgcggcctg
atcggcaacgacctggccgggctggagaagatctgggagaaccgccctgaacctgcgcgc
ggcagttggcgccaggaagtggagacggtcgtcgccggccaggtcgtcggcctgcgcaag
aagggcgacagccagatgttcgtgcagatcgaggacggccgcggccgcatcgaatgcgcc
ttcttcaacgagacctacagcgagttcgcgcagttgctggtgcgtgaccggttgctggtg
atccagggcaacctgcgcgaggacaccttcagcggcggtttcgcgctgcgcgcggtgcgc
tgctgggattacgagcaggtgtgcacgcgcaatgcgcagcggctgtcgctgcggctggac
ctgcgcgaaccgggcacgtggcagcgcgtcgatacggtgctggcgggcaaccgcccgggt
tcgacgccgatccgcctggacctgctggtgcgcaagggcagcgcgggcatgctcgacctc
aacggcacgcagtcggtgcggatcgatgcggaactggcgtcgaagctgcgatcgacgccg
ggcgtaagggcggtgaaggttacgttggcgaaaccctag
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