Lysobacter arenosi: HIV01_007740
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Entry
HIV01_007740 CDS
T07237
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lare
Lysobacter arenosi
Pathway
lare03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HIV01_007740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lare03019
]
HIV01_007740
Enzymes [BR:
lare01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HIV01_007740
Messenger RNA biogenesis [BR:
lare03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HIV01_007740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QSX76356
LinkDB
All DBs
Position
complement(1661754..1663064)
Genome browser
AA seq
436 aa
AA seq
DB search
MTFESLGLSPALLRALADQNYTVPTPIQAEAIPLAMAGHDLLGGAQTGTGKTAAFGLPLL
QRMSKQTPSNGFRRPRALILVPTRELAVQVTESLRGYSRHVRLNIAAIFGGAGMGPQVEL
FRRGVDVLVATPGRLIDHMERGTVKLDAIEVLVLDEADRMLDMGFLPAMKRILAKLPRER
QTMLFSATFESQLKQLALEFMHHPKQVQVAAQNTIAETIVHRAHPVDVAKKRDLLVSILA
SRHTDRAIVFGRTKHGCNRLAEQLEESGLASVAIHGNKSQAQRQKALRDFKSGKARVLVA
TDVAARGLDIPDLPLVINYDLPMVAEDYVHRIGRTGRNGATGEALSLVAPEEGGLLRQIQ
RMLKADIELVSVPGFEASRPIQMNAPIPNPRGASQPRKPSHRPHGKPAARHAHAGPKQHR
SGGQGAGRGSRSGFSG
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcgaatccctcgggctttcgcccgcgttgctgcgcgcgctcgccgaccagaac
tacaccgtccccacgccgatccaggccgaagcgatcccgctcgcaatggccggccacgac
ctgctcggcggcgcccagaccggcaccggcaagaccgctgccttcggcctgccgctgctg
cagcgcatgtccaagcagaccccgtccaacggcttccgccgtccgcgcgcactgatcctg
gtgccgacgcgtgagctcgcggtgcaggtcaccgagagcctgcgtggctattcgcgccac
gtccgcctgaacatcgccgccatcttcggcggcgccggcatgggcccgcaggtggagctg
ttccgccgcggcgtcgacgtgctcgtcgccaccccgggtcgcctgatcgaccatatggag
cgcggcaccgtcaagctcgatgcgatcgaagtgctcgtgctcgacgaagccgaccgcatg
ctcgacatgggcttcctgccggccatgaagcgcatcctcgccaagctgccgcgcgagcgc
cagacgatgctgttctcggccacgttcgagtcgcagctcaagcagctcgcgctcgagttc
atgcatcaccccaagcaggtgcaggtcgccgcgcagaacaccatcgccgagaccatcgtg
catcgtgcccacccggtcgatgtcgccaagaagcgtgacctgctggtgtcgatcctcgcc
agtcgccacaccgatcgcgcgatcgtgttcggccgcaccaagcacggctgcaaccgcctt
gccgagcagctcgaagagtcgggcctggcgtcggtcgccattcacggcaacaagagccag
gcacagcgccagaaggccctgcgcgacttcaagtcgggcaaggcccgcgtgctggtcgcc
accgacgtcgccgcgcgcggtctggacattccggacctgccgctggtgatcaactacgac
ctgccgatggtcgccgaagactacgtgcaccgcatcggccgtaccggccgcaacggcgcc
acgggtgaagcgctgtcgctggtcgcgccggaagagggcggtctgctgcgccagatccag
cgcatgctcaaggccgacatcgagctggtctcggtgccgggcttcgaagcgagccgtccg
atccagatgaacgctccgatcccgaacccgcgcggcgccagccagccgcgcaagccgtcg
catcgcccgcacggcaagccggcagcgcgtcacgcgcatgcaggtccgaagcagcatcgc
agtggcggccagggtgccggccgcggctcgcgcagcggcttcagcggctga
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