Lysobacter arenosi: HIV01_009430 Help Entry HIV01_009430      CDS       T07237                                  Symbol hrpA Name (GenBank) ATP-dependent RNA helicase HrpA   KO K03578   ATP-dependent RNA helicase HrpA [EC:5.6.2.6] Organism lare  Lysobacter arenosi Brite KEGG Orthology (KO) [BR:lare00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:lare03019]     HIV01_009430 (hrpA) Enzymes [BR:lare01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      HIV01_009430 (hrpA) Messenger RNA biogenesis [BR:lare03019]  Prokaryotic type   Bacterial mRNA degradation factors    Other RNA degradation factors     Others      HIV01_009430 (hrpA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DUF3418 Helicase_C OB_NTP_bind HA2_C DEAD HA2_N AAA_19 AAA_22 nSTAND3 SRP54 AAA_23 AAA_30 T2SSE NACHT AAA_25 Cas3-like_C_2 TsaE PhoH ABC_tran Motif Other DBs NCBI-ProteinID:  QSX76762 LinkDB All DBs Position complement(2014592..2018566) Genome browser AA seq 1324 aa AA seqDB search MDPAQSRQPDVSNALRQARRAIDGALSRDRGRLQGLWSRWSGKPADERAREAFAQALSAS VAQRQARAAALPQAPVDPSLPIAAEAERIVELIRKHQVIVIAGETGSGKTTQLPKLCLAA GRGAAGMIGCTQPRRIAARAVARRVAEELQTQLGGAVGYQVRFTENVGEQTAVKFMTDGI LLAEIQSDRWLSRYDTILIDEAHERSLNIDFLLGYLKQLLQRRPDLKVIVTSATIDTERF AQHFGDAPVVNVEGRGYPVSVRYRPLGEGEDDGEQGRDGGSRDRSVNDGIVAACDEITRE DPRGDVLIFLSGEREIRDAHQALERRKYRETEVLPLYARLSVRDQDRVFNPGPKRRIVLA TNVAETSLTVPRIRYVVDPGLARVKRYSPRGKLDRLHIEPISQASADQRKGRCGRISEGT CYRLYSEADFLSRARYTDPEIRRAALAGVILRMLSLGLGNIEDFPFLEPPDPRAVADGWQ QLGELGAVDESRKLTPTGKLMSRLPVDVKLARMLVAANQHGVLREMLVIASFLGIQDPRE RPADQRAAADNAHAQFADPKSEFVGILKLWEAYQSAHEELTQSKLRGWCEKHFVGFLRMR EWRELHRQLRLMGDELDWNSEPRAGEFDQAVYTTLHRALLAGLPTQIGFRSERGQYDGPR GRKFQLFPGSPLAKKPPPWVLSATLLDTERVWSLTNAGIEPDWVIAELPHLLARRQHDPR WARSQGRVVGSEQISLFGLVLAPKRPVHYGALFPEESRVIFARDALVTGEINTRSAFLAR NLATLAKARDEEAKQRRSGLVVEEEWMAQWYLDRLPSHVHNAQALDAWYGKLPPAEKAAL EWSLADLMVVDESDAQRFPPYLALGNARLAVKYRFEPGASDDGMTLAVPLHLLNALDPVR LSWLAPGFVADKAAALIKSLPKTLRRNFVPAPDFARAFFEAHPQASADSITGELSRFLSK LGGVAVVALDFDEAALEPHLRMNLQLIEGGGKGESRNVLAESRDLDDLRRRFGERAAAAF AARAADGLAQQGLTTFPDSPIPVSVAGAGGVPAYPALHDDGESVSLRVHAEAEVARREHP RGVRRLLAIALADKLKQARKQLPVTPKTGLLYAAIESAAPRNDGLKEGDRLRLDLVDGAF ASLAADGAGAGLFDIRDSGAFAARRDAIAKQLFADAMERLRQAETILGAVAEARAKLESP LMGWASGNLDDMRAHLASLTPPGFLRNVPAQALREYPRYLKALALRGERALRDPVRDQAR MLEIKPFADALARAVEEGAGDQPEWQALRWDLEELRVSLFAQELGARGGVSPKKLAQRLS QLRR NT seq 3975 nt NT seq  +upstreamnt  +downstreamnt atggacccggcgcagtctagacagcccgatgtcagtaacgcgttacgccaggcccggcgc gccatcgatggtgcgctgagtcgcgaccgtgggcgactgcaagggttgtggtcgcgctgg agcgggaagccggcggacgaacgcgcacgcgaggcctttgcccaggcgctgagcgcatcg gtcgcgcagcgccaggcacgggccgcggcgctgccgcaggcgccggtcgatccgtccttg ccgatcgcggccgaagccgaacgcatcgtcgagctgatccgcaaacaccaggtgatcgtc atcgccggcgagaccggctcgggaaagaccacccagttgccgaagctgtgcctggcggcc gggcgtggtgccgccggcatgatcggctgcacccagccgcgccggatcgccgcgcgcgcc gtggcgcggcgcgtggccgaggagctgcagacccagctcggtggcgcggtcggttaccag gtgcgcttcaccgaaaatgtcggtgagcagaccgcggtcaagttcatgaccgacggcatc ctgctggccgagatccagtccgatcgctggctgtcgcgctacgacaccatcctaatcgac gaggcgcacgagcgcagcctcaacatcgacttcctgctgggctacctcaagcagctgctg cagcgtcgcccggacctgaaggtcatcgtcacctcggcgacgatcgacaccgagcgcttc gcccagcatttcggcgatgcgccggtggtcaatgtcgaaggccgcggctatccggtgtcg gtgcgctaccgcccgctcggcgaaggcgaggacgacggcgagcaggggcgcgacgggggc agccgcgaccgcagcgtcaacgacggcatcgtcgccgcctgcgatgaaatcacccgcgag gatccgcgcggcgacgtgctgatcttcctgtccggcgagcgcgagatccgcgacgcccac caggcactggagcgccgcaagtaccgcgaaaccgaagtgctgccgctgtatgcgcggttg tcggtgcgcgaccaggatcgcgtcttcaatcccggtcccaagcgtcggatcgtgctggcc accaacgtcgccgaaacttcgctgacggtgccgcgcatccgctacgtcgtcgatcccggc ctggcccgcgtcaagcgctacagcccgcgcggcaagctcgaccggttgcacatcgagccg atcagccaggccagtgccgaccagcgcaagggccgctgcggacgcatcagcgaaggcacc tgctatcgcctgtactccgaagccgacttcctgtcgcgggcgcgctacaccgatccggaa atccgtcgtgccgcgctggccggcgtgatcctgcggatgttgtcgctggggctgggcaac atcgaggatttcccgttcctggagccgccggatccgcgcgcggtcgccgacggctggcag caactgggcgagctgggcgcggtcgacgagtcacgcaagctcacgcccaccggcaagctg atgtcgcgcctgccggtcgacgtgaagctggcgcgcatgctggtcgccgccaaccagcac ggcgtgctgcgcgagatgctggtgatcgcctcgttcctgggcatccaggacccgcgcgag cgcccggccgaccagcgcgccgctgccgacaatgcccatgcccagttcgccgatcccaag tcggagttcgtcggcatcctcaagttgtgggaggcctaccagtcggcgcacgaagaactc acccagtcgaagttgcgtggctggtgcgagaagcacttcgtcggcttcctgcgcatgcgc gagtggcgcgagctgcaccgccaactcaggctgatgggcgatgagctggactggaacagc gagccgcgtgccggcgagttcgaccaggcggtgtacacgacgctgcaccgtgcgctgttg gccggcctgccgacgcagatcggcttccgcagcgagcgtggccagtacgacggcccgcgc ggtcgcaagttccagttgttccccggttcgccgctggcgaagaagccgccgccgtgggtg ttgtcggcgacgctgctcgacaccgagcgcgtgtggtcgctgaccaacgccgggatcgag ccggattgggtcattgccgagctgccgcatctgctggcgcgtcgccagcacgatccgcgc tgggcgcgatcgcagggtcgcgtggtcggcagcgagcagatcagcctgttcggcctggtg ctggcgcccaagcggccggtgcactatggcgcgctgttcccggaagagagccgcgtcatc ttcgcccgcgacgcgctggtcaccggcgagatcaatacccgcagtgcgttcctggcgcgc aacctggccacgctggccaaggcccgcgacgaggaagccaagcagcgccgcagtggcctg gtcgtcgaagaagaatggatggcgcagtggtacctcgaccgcctgccgtcgcacgtgcac aacgcgcaggcgctcgatgcctggtacggcaagctgccgccagcggagaaggccgcgctg gaatggtcgttggccgacctgatggtggtcgacgaaagcgacgcgcagcgcttcccgccg tacctggcgcttggcaatgcgcgactggcggtgaagtaccggttcgaacccggtgccagc gacgatggcatgacactcgccgtgccgctgcacctgctcaacgcgctcgatccggtgcgc ttgtcctggctggcgccgggcttcgtcgccgacaaggcggcggcgctgatcaagtcactg cccaagaccctgcgccgcaacttcgtgccggcgccggatttcgcccgggcgtttttcgag gcgcatccgcaggccagcgccgacagcatcaccggtgagctgtcgcgtttcctgtcgaag ctcggtggcgtcgcggttgtggcactcgacttcgatgaggcggcgcttgagccgcacctg cgcatgaacctgcagctgatcgaaggcggcggcaagggcgagagtcgcaacgtcctggcc gaatcgcgcgacctcgacgaccttcgtcgccgtttcggcgaacgcgcggccgcggccttc gcggcccgcgccgccgacggcctggcgcagcagggcctgacgacgttccccgattcgccg atcccggtctcggtggcaggcgcgggcggtgtccccgcgtacccggcgttgcatgacgat ggcgagagcgtgtcgctgcgcgtgcatgccgaagccgaagtggccaggcgtgagcacccg cgtggtgtgcgcaggctgttggcgatcgcactggccgacaagctcaagcaggcgcgcaag caattgccggtcacgccgaaaaccggattgttgtacgccgccatcgagtcggcggcaccg cgtaacgatggcctgaaggaaggcgatcgtctgcgcctggatctggtcgacggcgcgttt gcctcgctggccgccgatggtgcgggcgcagggctattcgacatccgcgattccggcgca ttcgccgcgcgccgcgatgccatcgcaaagcaactgttcgccgacgcgatggaacgcctg cgccaggccgagaccatcctgggcgccgtcgccgaagcacgcgccaagctggagtcgccg ctgatgggctgggccagcggcaacctcgacgacatgcgcgcgcacctggcgtcgttgacg ccgccgggcttcctgcgcaacgttccagcgcaggcattgcgcgaatatccgcgctacctg aaggcgttggccctgcgtggtgaacgcgcgttgcgcgatccggtccgcgaccaggcgcgg atgctcgagatcaagccgtttgccgacgcgctggccagggccgtggaagagggcgcgggc gaccagcccgagtggcaggcgctgcgctgggacctggaggagctgcgcgtgtcgctgttc gcccaggaactgggcgcgcgcggcggcgtgtcgccaaagaagcttgcgcagcggctgtcg cagctgcgccgctga

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