Lysobacter arenosi: HIV01_012035
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Entry
HIV01_012035 CDS
T07237
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lare
Lysobacter arenosi
Pathway
lare00040
Pentose and glucuronate interconversions
lare01100
Metabolic pathways
lare02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
lare00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
HIV01_012035
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HIV01_012035
Enzymes [BR:
lare01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
HIV01_012035
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
QSX73949
LinkDB
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Position
2588013..2589365
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AA seq
450 aa
AA seq
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MSTRKSVLLSALLLALSSPGSFAAPPQPLERQTLPANDGWASLPTAALPSGTTGGSAADA
IRVHDVSDRNALVAALSFPDPTPKIIRITGMIDANVDDAGNPLTCADYARPDPQSATPYS
LDAFLAAYDPAVWGRVNPSGPLERARVASAAAQQARVRIRVPANTTIVGVGRGAGLRGAW
VDIRPSSTSGNQPMNVIVRNLSFVDTYDCFPQWAPTDGAEGNWNSLYDAISVRNSTHVWI
DHNAFLDIDTADSTQPSFFGRLYQVHDGLVDVTNESDLVTVSWNLLANHDKAMLFGSSDG
AVADRGKLRVTLHHNLFHDLGQRVPRVRYGQVHVYNNQYSLTPDGAQTYGYSWGAGIEGQ
IYAQNNHFLMPVAVTPDLFVERFNGTALQAQGTLLNGFTRHSEVDVVAAFNATSATPLQP
NVAWTPTLYRRIDPTWSVPLTVILGAGPYK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagcactcgcaagtccgtcctgctgtccgcactgttgctggccctgtcctccccgggc
tcgtttgcggcgccgccgcaaccactggaacgccagaccctgcccgccaacgacggttgg
gcatcgctgccgaccgcggcattgccgtcgggcactaccggtggctctgccgccgatgcc
atccgcgtgcatgacgtcagcgaccgcaacgcgctggtcgccgcactctcctttcccgat
ccgacgccgaagatcatccgcatcaccggcatgatcgacgccaatgtcgacgacgccggc
aacccgctgacctgcgccgactacgcgcgtccggatccgcagagcgcaacgccctactcg
ctcgatgcgttcctcgctgcttatgacccggcggtgtggggacgcgtcaatcccagcggg
ccgctcgagcgcgcgcgcgtggcctcggccgcggcgcaacaggcgcgcgtgcgcatccgc
gtgcctgccaacaccaccatcgtcggcgtcggtcgcggtgccggcctgcgcggcgcctgg
gtcgatatccgcccgagcagcaccagcggcaaccagccgatgaacgtgatcgtgcgcaac
ctcagcttcgtcgacacctacgactgcttcccgcagtgggcaccgaccgacggcgccgaa
ggcaactggaactcgctgtacgacgcgatctcggtgcgcaactcgacccatgtctggatc
gaccacaacgccttcctcgacatcgacaccgccgacagcacccagcccagcttcttcggc
cgcctctaccaggtgcacgacggcctggtcgacgtgaccaacgagtccgacctggtgacg
gtgtcgtggaacctgctggccaaccacgacaaggcgatgctgttcggatcgtccgacggt
gccgtcgccgatcgcggcaagctgcgcgtgacgctgcaccacaacctgttccacgacctg
ggccagcgcgtgccgcgcgtgcgctacggccaagtccacgtctacaacaaccagtacagc
ctgacccccgacggcgcccagacctacggatacagctggggcgccggcatcgaggggcag
atctacgcccagaacaaccatttcctgatgcccgtcgcggttacgccggacctgttcgtg
gaacgcttcaacggcaccgcgttgcaggcacagggcacgttgctgaacggattcacccgc
cacagcgaggtcgacgtggtcgccgccttcaacgcgaccagcgccacgccgctgcagccg
aacgtggcatggacgccgacgctgtatcgacgcatcgatccgacctggtcggtgccgttg
acggtgatcctcggggcaggtccgtacaagtaa
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