Lactiplantibacillus argentoratensis: LPA65_02295
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Entry
LPA65_02295 CDS
T07625
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
larg
Lactiplantibacillus argentoratensis
Pathway
larg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
larg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPA65_02295 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
larg03400
]
LPA65_02295 (mfd)
Enzymes [BR:
larg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPA65_02295 (mfd)
DNA repair and recombination proteins [BR:
larg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LPA65_02295 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
SNF2-rel_dom
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AYJ34677
UniProt:
A0AAN1PZN8
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All DBs
Position
493823..497350
Genome browser
AA seq
1175 aa
AA seq
DB search
MDIETIVEQTPDFQTILAGISPRSRQLITGLNGSARTVYLSALFHQLTHSLLIVTDNGFH
ASQLVDDLTSLLDEDQVFLFPAEEMIATEVATSSPESRAQRVQALNALLRDSPAVVVTSV
AGARRFLPPVAQFQAATLPVAVGQDIDLEDLQRQLHDMGYVKEKLVARPGDFAVRGSIVD
IYPLDADYPLRLDFFDTEVDTLKYFDPETQRSVENLDEYTILPATDFILTSAMLQAGAQR
LKTAIAAESKKLKPAERQTLADNLAQPLADMEKGIIGNDLLLYGDYLYDRKTSIFDYVAA
DGLVIFEEYSRLLDSEQQLLTQEADWVTDQLAHHRVLATASYGNDIRDLLRDDQHAQLLI
SLFQKGIGNVKLAQVTNVRTRPMQEFFGQLPALKTELDRWHKLKQTVVLMVSEAERLTKV
SDTLDDFEIEAVMTKATNLQPGAVQIVQGSLQNGFEFPDGKLVIVTEQEMFKKVAKKRPR
RQTLANAERLKSYTDLKPGDYVVHVNHGIGKYVGMETLEVDGVHQDYITIAYQNNAKIFI
PVTQLNLVQKYVSSESKTPRINKLGGTEWTKAKRKVAAKIEDIADELVDLYAKREAEKGY
AFPPDDSYQDDFDNDFPYPETPDQIRSINEIKHDMERPKPMDRLLVGDVGYGKTEVALRA
AFKAIEAGKQVAFLVPTTILAQQHYETMLNRFEGYPINVGMLSRFRTTKEMKETVQQLKS
GEIDIVVGTHRLLSKDVAFADLGLLIIDEEQRFGVKHKERLKALKASVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNFGVIKEGIEREMQRNGQVFYLHNRVHD
IDKVVAQIKDLVPDAAVAHIDGQMPESQLEGILYDFIRGEYDVLVTTTIIETGVDIPNVN
TLFVENADRMGLSQLYQLRGRIGRSSRVAYAYFTYQQNKVLTEVGEKRLQAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLSEAVAKKRGQAAKVKTDATVEL
GIEAYLPTSYIEDERQKIEIYKRIRQLENNDQYMEVQDDLMDRFGDYPVEVAGLLAVGKL
KLLADDALIEKIQRDDSELHLTLSKQGTAKLDTKDIFKALAKTKLKATVGIDDDKMKVKL
VIQPKMQQDEWLAQLTQFVEQLSLILAEDDVASAS
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggatattgaaacgattgttgagcaaacgcccgactttcaaacaattttagcaggtatc
agcccgcgtagtcggcaactaatcaccggattgaacggttcggcacgaacggtttattta
agcgcgctatttcaccaattaacgcattcattactgatcgtgaccgataacggttttcac
gcgagtcagctagtggatgatttaacgagtctcttagatgaagaccaagtttttttattc
ccagctgaagaaatgattgcgacggaggttgcgacaagttcaccagagtcacgagcgcaa
cgagtccaggctttaaacgccttattgcgtgacagtccggcagtggtcgtgacctcggtt
gcaggtgcccggcggttcttgccgcccgtcgcacaatttcaagcagccacgttaccggta
gccgttggtcaagatattgatttggaagacttgcagcggcaactacacgacatgggttac
gttaaggaaaagttagtcgcacgcccaggagattttgcggtacggggctcaatcgtggat
atttacccgttagatgcggactaccctttacgactggacttctttgatactgaagttgat
acactgaagtattttgacccggaaacgcaacgttcggtggaaaacttggatgagtataca
attttgccagctaccgattttatcctgacatcagctatgctgcaggccggggcacagcgt
cttaaaacggcgattgcggctgaaagtaagaaactcaagccagccgaacgccagactttg
gccgataatttagcacaacctttagctgacatggaaaaaggaattatcggaaacgattta
ttattatatggcgattatttatacgaccggaaaacgagtatttttgactatgtggccgct
gacgggctcgttatcttcgaagaatattcgcgtttgcttgatagtgagcagcagttatta
acgcaagaagctgactgggttacggaccaattggcacatcaccgggtgttggcaactgcg
agttacggcaatgatattcgggatttgctccgggatgaccaacatgcacaactcttgatt
tcgctgtttcaaaagggcatcggcaacgtcaaactagcgcaagtaactaacgtgcgcaca
cgcccgatgcaggaattctttgggcagctcccagcgttgaagaccgaactggatcggtgg
cataagcttaaacagacggtggtcttgatggtatcagaggctgagcgtctgacaaaggtc
agtgatacacttgatgattttgaaatcgaagcggtcatgactaaggccactaatttacaa
ccgggggcggttcaaatcgtgcaaggtagcttgcaaaatggatttgagtttccggatggt
aaattagtcatcgtaaccgagcaagaaatgttcaagaaggtggctaagaagcgtccacgt
cgtcagaccttggctaatgccgaacggttgaagagttatacggatctcaaacccggcgat
tacgtcgtgcacgtcaatcacgggatcggaaagtacgttggtatggagacgctggaagtt
gatggtgtccatcaagactacattacgattgcgtatcaaaataatgcgaagatctttatt
cccgtgacccagttaaacctagttcaaaagtacgtttcgtcagaatcaaagacgccacgc
atcaataagttgggtggtactgaatggacgaaagcgaagcgcaaagtcgcggcgaaaatt
gaagatatcgcggatgaactagtcgacctgtatgccaagcgagaggcggagaaaggttac
gcctttccaccggacgatagttatcaagatgatttcgataacgattttccgtacccagag
acgccagatcaaattcgtagtattaatgaaatcaagcatgatatggaacgaccgaaaccg
atggaccgcctattggtcggcgatgttggttatgggaagacggaagtcgcgttgcgggcc
gcgtttaaggcgattgaggccggcaaacaagtggcctttctagtgccaacgaccatttta
gctcagcaacattatgaaacgatgctgaatcggtttgaaggctacccgattaacgttggc
atgctgtcacgattcagaacaactaaggaaatgaaagagacggtccaacagttaaagagt
ggtgaaattgacatcgtggttggtacgcaccgcttactgtctaaggacgtcgcgtttgct
gatctgggcctgctcattattgatgaggaacaacggtttggggtcaagcataaggaacga
ctgaaggccttgaaggctagtgtggatgtcttgacgttaacggcaacgccgattccgcga
acattacacatgtcgatgctcggcgtacgggacttatcagtgattgagacgccgccaacg
aaccgttatccgatccaaacgtacgtcatggaacagaattttggcgtcattaaagaggga
attgaacgagaaatgcaacgtaatgggcaggtcttttacttgcataaccgagtccatgat
attgataaagtcgtggcacaaatcaaagacttggttcccgacgcggcggtggcccatatt
gatggtcagatgcctgagtcacaactcgaagggatcctgtatgatttcattcggggtgag
tacgatgtgttagtgacaacgacgatcattgagaccggggtcgatattccaaacgtcaac
accttgtttgtggaaaatgccgatcggatgggattatcacagctctaccagttgcgtggt
cggattggtcggagtagtcgggtcgcctatgcttactttacttatcaacaaaataaggtt
ttgacagaagttggtgagaaacggttacaggccatcaaggactttacggaactgggatct
ggctttaaaatcgcgatgcgcgacttgtcgattcggggtgcgggtaacttgttaggtaag
caacagcacggcttcattgactcagttggttatgacctctatacccagatgttgtcagaa
gcagtggcgaagaagcgtggtcaggcggctaaagttaagaccgatgccacggtcgaactt
ggaatcgaagcctacttgccgaccagctatattgaagatgaacggcaaaagatcgaaatt
tataaacggattcgccagctggagaataatgatcagtacatggaagttcaggatgattta
atggatcgatttggtgattatccggtagaagtcgctggactattagcagtaggtaagctg
aagttactggcggatgacgcgctgattgagaagattcagcgtgacgatagtgagctacac
ctaacgttatccaaacaagggacggctaagctagatactaaagatatttttaaggccttg
gcaaaaacaaaattaaaagcgacagttggaattgatgatgataaaatgaaggttaaatta
gtcattcagccaaagatgcaacaggatgagtggctggcgcaattaacacagtttgtcgaa
caactgagtttgatcttagccgaagacgatgttgctagtgcgtcttag
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integrated database retrieval system
