Candidatus Liberibacter asiaticus psy62: CLIBASIA_00105
Help
Entry
CLIBASIA_00105 CDS
T00948
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
las
Candidatus Liberibacter asiaticus psy62
Pathway
las03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
las00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLIBASIA_00105 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
las03021
]
CLIBASIA_00105 (rpoC)
03400 DNA repair and recombination proteins [BR:
las03400
]
CLIBASIA_00105 (rpoC)
Enzymes [BR:
las01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLIBASIA_00105 (rpoC)
Transcription machinery [BR:
las03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLIBASIA_00105 (rpoC)
DNA repair and recombination proteins [BR:
las03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLIBASIA_00105 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
ACT56615
LinkDB
All DBs
Position
complement(19927..24123)
Genome browser
AA seq
1398 aa
AA seq
DB search
MQQEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKS
LPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIA
MMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMI
IRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRM
LQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAG
PELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQ
HVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQL
EARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALE
NKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKN
ISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKM
VKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIF
MMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGL
LDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRT
ALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDL
ARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRN
VCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHT
FPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENG
VVLKSARGTDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFE
ARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVE
KGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVE
ITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASF
QETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMILKERSN
FSQNEDLKNTAIQGSIAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagaggtcatgagattttttaatccgtggacagatgatagaggatttgattca
gtcaggatctcaattgcctctccagctaagattgcgtctttgtcttatggtgagataaaa
aagcctgaaacaattaactaccgtaccttcaagccagaaagagatggtttgttttgtgct
cgtatttttggacctattaaagattacgaatgtatatgcggcaaatataaacgtatgaag
tataaggggattatttgtgaaaaatgtggtgttgaggtaacactatcctctgttcgccga
gatcgtatggctcacatcgatttggcttctcccgttgctcatccttggtttcttaagtct
ttgccatctcgtatatcgacgttgcttgggatgagtttaagggatgtagaacgtgtgtta
tatttcgagagttatgtcgtcgttgatcctggtttgtcttcgctagaaaaatatcagatt
ttaacagaagaagagtatgtcgaagcagtaagccagtttggtcaggatcagttcattgct
atgatgggggctgacgcgatatatgaattattaattgcattggatcttcagaatctggct
cttactttgcgtgatcaattgagtaaatcttcttctatttttagaagaaaaaagataata
aaacgtcttaaaattgttgatagttttataacttcaggtaataatcctggatggatgatt
ataaggaagcttcccgttcttcctccagatttgagaccattggtagctcttgattttggg
agatttgccgcttctgatttgaatgatttataccgccgagttattggtcggaataatcgc
ttgatgagattgaagagtttgcatgctccagaaattattattcgtaatgaaaagagaatg
cttcaagaatctgttgatgctctatttgataatggacgtcataagcgtgtggtcactggt
gcgaatagacggcctttgaagtctctatctgatatgttaaaaggtaaacaggggcgcttt
agaacgaatcttctggggaaaagagtcgattattctggacgtagtgttattgttgcgggt
ccagagttgcaattgcaccaatgtggtctccctaaattaatggcgcttgaattgttcaaa
ccctttttatatgcacagttagaaaaaaaaggatatgtttctactgttaagcaggccaag
aagtttgttgaaaaagaaaggccagaagtttgggatgtgctagcggaagtagtccatcag
catgttgtattgcttaatcgtgctccgagtttgcatcgtttaagtatgcaggcttttgaa
cctaaaattataagtggaaaagctattcaactccatcctttagtatgtgctggatataat
gctgactttgatggagatcaaatggctgtctatgctgtgatttctcctgaagcacagttg
gaagcacgtgtgttgatgttgtccacaaataatcttctacatcccgcaagtggggcacca
gttacagtgccttcgcaagatatggtattaggactttgttacttatctactgttcatgaa
ggtgatccaggcgaagggatgctctttgctgatatgggtgaggtgtatcatgcgcttgaa
aataaaatagttactttgcattctaaaatccgtggaaggtataagagtgttgataaagat
ggaaattcaatttcgaagatttatgatacgactccagggcgcatgattataggtgaaata
ttacctcgtcatcacgaaatttcgtttgatatttgtaatcaggagatgattaagaagaat
atttccgctatggtggatacgatttatcgccattgtggacagaaaagtacagttgctttt
tgtgatgatcttatgcgtttgggattccgttatgcttgttcttctggaatttccttcggt
aaagatgatataattgttcctgaatcgaaggaaaaaattattgctgaagccgataagatg
gtgaaagaatatgagaatcagtataatgatgggttgattacgcgtggggaaaaatataat
aaagttgttgatttatggggaaagactactgataaagtcactgaagagatgatggcacgt
attaaacgagttgaatttgatccagagactggacgtcaaaaaaagatgaactctatattc
atgatgtctcattctggtgctcgtggttctatacatcaaatgcgtcagcttggtggaatg
agaggtttgatagcgaagccatctggggaaattattgaatcaccgattcgttctcatttt
aaaggtggtctttgtggatttgaattcttccaatcttgtgttggtggtcgtaaaggattg
cttgatgttgtgatgagaactgctagttctggttacttaagtcgtagacttgtagatgtt
gcgcagaattgcgttgtcaatcaagttgattgcaatacaaaaaagggtttgactattacg
cacatagtagattctggacaagtggtttattcccttggaagtcgagtcctaggacgtacg
gctcttgatgatattattaatccattgacaaatgaatgcattgtgaaggctgggcaacta
atacttgaatcacatgttaatgaaattgaaaaatgtggtattcgttctgtaaggattcgt
tctgcgttgacttgtgaatctagtaggggagtttgtgtgctttgttatggtcgtgatctt
gctcgaggatcgcttgttaacgtaggtgaagctgttggtgtaattgctgctcaatcgatt
ggtgagcccggaacacagttgacgatgcgtactttccacctcggaggtgctgtaacagtt
atggatcggtctttcattgagtctccatgtgacggaatagttaagatcaaaaatcgtaat
gtttgtcgtaattctacaaatgatctcatttctatggggcgtaatacgacacttcaaatt
ttagatatgtcaggacaagagcaatattcacatcgcatcatgtatggtgctaaattattt
gttgatgatggtggtgtaatagagtgtggacaacgtatttccgaatgggatccccatact
tttccaattataaccgaggtttctggaacagtgggtttcgaagatcttgtagatggtatt
tctgtaatagaaagcattggcgagtctacgggtattgctaaacggaaagttatcgattgg
cggtttgctagtcgaagtcaaaacttaaaacctgcgatcgttgttacagatgaaaatggt
gttgtattaaaatctgctcgtggaacagatgctcgctggttcttgccagtagatgcgctt
ctttcagtatctcctggacaaaaagtttcgacaggggatgttctagctcgtttgccaata
tctagtgctaagacaaaggatattacgagtgggttgccgcgggttgctgagctttttgaa
gctcgtcgtcccaaaaatcatgctatattagcagagattagtggaactattagaataaaa
agaaattataagaataagtctcgcgtggtaattgaacctttcgaagatggtgttgagcct
gctgaatactttattccaaaaaataaacatttctatctgcaagatggagatcatgttgaa
aaaggtgattatatccttgatgggaatcctgtcccacaagatattttgagaattaagggt
gtggaggcgttggcatcttatcttattaatgaggtacaagaagtttatcgtcttgagggt
gttgcaatcaatcataagcacatagaagttgttgttcgtcatatgttgcaaaaggttgaa
attactgatcccgctgataccgagtatatattaggggataatgttgatcgcattgaagta
gaagagttgaataggagtcttgcgcaacaagggaaaaaattggtttctttctctcctatc
cttcaaggtattacaaaagcttctctacagactaagtcttttatatcagcggcttctttt
caggaaacaacgaaagttcttactgaagcagctatcgctggtaaagttgatactttagat
gggtttaaagaaaatgttattgtaggtcgtagtattcctgctggaacaggggctatttta
catgagaaacgacgtgttgctatgaatagagaccagatgattctaaaagaaagatctaat
ttttcgcagaatgaagatttgaaaaatacggctattcaggggagtatagcggagtaa
DBGET
integrated database retrieval system
