Candidatus Liberibacter asiaticus psy62: CLIBASIA_00110
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Entry
CLIBASIA_00110 CDS
T00948
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
las
Candidatus Liberibacter asiaticus psy62
Pathway
las03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
las00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLIBASIA_00110 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
las03021
]
CLIBASIA_00110 (rpoB)
03400 DNA repair and recombination proteins [BR:
las03400
]
CLIBASIA_00110 (rpoB)
Enzymes [BR:
las01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLIBASIA_00110 (rpoB)
Transcription machinery [BR:
las03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLIBASIA_00110 (rpoB)
DNA repair and recombination proteins [BR:
las03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLIBASIA_00110 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ACT56616
UniProt:
C6XH71
LinkDB
All DBs
Position
complement(24186..28346)
Genome browser
AA seq
1386 aa
AA seq
DB search
MAKGVVFNGLGRVRKFFGKNPEIIDIPDLIEVQKASYDHFLMMNIAPDERPNEGLQAAFK
SVFPITAFSGAAMLEFVSYEFDPPKFDVDDCLWRDLTYAVPLKITLRLIVFDVDEFTGAK
SIKDIKEQSIYMGDLPLMTKDGTFVIKGIQRIVVSQLHRSPGIHFDHDKGRASLSGKLLY
ACRIIPDQGLWMDIEFDSKDIIHVRIDRRRKVPVTSFLMALGMDSEEILSTFYPKIVYSQ
RGDFWCFPLSAADLMVGAKVSSSLVDIDTGEQVIESGKKLTSGLLKSLKEKGVKFLGITS
DCLCGLYVAEDIVNGETGEIYIEAGDVIDEKSLEEIFHSEIRDIPILYVDSVNNNAYIRN
TLVTDKNKDRKDALLDIYRVMRPGDVSTFSVAESMFNFLFFDSDKYDLSTVGRVKMNMRL
NLDTPDDVRHIRKEDIIAIIKILVDLRNGKGTIDDIDNLGNRRVRSVGEMLKNQYRLGLL
RMERSIKERISSVDIDSVMPQDLINAKPVVSAVCEFFCSSQLSQLEEHVNSLSRITHTRR
LSALGQGGVARARAGVEMRDVHPTHYGRICPAETSEGHNIGLVSSLTSFARVNAYGFIET
PYRKVCDGKVTNDVVYLSAMEEENRYIAQANSSLDEDGSFTEELVFCRCAGEEILVPREK
IDFIDASPKQVVSIAASLIPFLENDDSNRVLMGCNMQRQAVPLLKAEAPFVGTGMESVVA
KSSGAAIVAKRAGIVEQVDAIRIVIRSVEGDLDPSTSGVDIYRLMKFQRSNQNTCVNQRP
LVKVGDEVRRNDIIADGPSTDLGDLALGRNMLVAFMPWHGYNFEDSMLISERMVSEDVFT
SIHIEEFEVMARDTKLGPEEITRDIPNVSEEGLKNIDECGIICVGAEVNPGDILVGKITP
KGESPMTPEEKLLRAIFGEKAVDVRDTSLRVPSGVSGTVVDVRIFNRHGIDKNERSISVE
REQIELLARDKDDEQVILDRNIYSRLMEILCGQNAVSGPKGFKKSTVLSSDLISEYPRSQ
WWQFAVQDEKVQRNVESLKVQYETSKSILEDRFKNKIEKIQWGDDMPPGVLRVVKVFVAM
KRPIQSGDKMAGRHGNKGIVSRILPCEDMPFLKDGTPVDIVLNPLGVPSRMNVGQIFETH
LGWACVGLGKKIKSLINDYKANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAEQW
KSGVPVSTPVFDGADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLN
HMVSDKVYARSTGSYSLVTQQPLGGKSNRGGQRLGEMEVWCIQAYGAAYVLQEMLTIKSD
DVVGRTRVYESIVAGNDTFETGTPESFNVLVKEMQALGLSIDLENSRTKNSAKMEEIPDF
NKCELK
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaggcgttgtgttcaatggtctcgggcgtgtgcgcaagttttttggaaaaaat
cctgagataattgacatacctgatctcattgaagttcagaaggcatcttatgatcatttt
ttgatgatgaacattgctcccgatgagcgtcctaatgaaggtttacaggctgcttttaag
tctgtttttcctattacggctttttctggggctgcgatgcttgaatttgtatcttatgaa
tttgatcccccaaagtttgatgtagatgattgtttatggcgtgatttgacgtatgccgta
ccattgaagataactctgcgtttgatcgtatttgatgtagatgagttcactggagctaag
tctatcaaagatataaaagagcaaagtatttatatgggcgatcttcctcttatgactaaa
gacggaactttcgttattaagggtattcagcgtatagttgtttcccagttacatcgttct
cctggtatacattttgatcatgataaaggaagagctagtttatcgggcaagcttttatat
gcttgccgtattattcctgatcaaggtttatggatggacatagaatttgattctaaggat
atcattcatgtacgcatagatagacgtcgcaaggttcctgtgacgtcttttttgatggct
ttaggaatggattctgaagagatcctatccactttttatcctaaaatcgtctattcacaa
agaggtgatttttggtgttttccgttgtccgctgccgatttgatggttggtgccaaggta
tcttcttccctagttgatatcgatacgggtgagcaagttattgaaagcggaaagaaatta
acttcaggcttattaaaaagtctgaaagaaaaaggagtaaagttcttaggaattacatcg
gattgtttatgcggtttgtatgtagcagaagatattgtcaatggcgaaactggtgagata
tatattgaagctggtgatgttattgatgagaagagtttagaggaaatttttcacagtgag
atcagggatatacctatcctttatgtcgattctgtgaataataatgcttatattcgcaat
accttagtaacagataaaaataaagatcgtaaagatgcccttttagatatttatcgtgtt
atgcgtccgggagatgtttctactttttctgttgcagaatcaatgtttaattttcttttc
tttgattctgataagtatgatctttcgactgttggtcgtgtcaagatgaatatgcgtttg
aatctggatacgcctgatgatgtacgtcatatcagaaaagaagatattattgctattatc
aagatattggttgatttgcgtaatggtaaagggacaattgatgacatcgataatttagga
aatcgtcgagttcgttctgttggggagatgttgaagaatcagtatcgtcttgggttattg
cgtatggagcgttctattaaggaacgcatttcatcagttgatattgattcagtgatgcct
caagatcttattaatgccaaacctgttgtgtctgctgtttgtgaatttttctgttcctcg
cagctttctcaacttgaagaacatgtgaactctctttcgcgtattacacacacacgtcgt
ttatcggctcttggtcaaggaggggtagcgagagcgagggcaggggtggaaatgcgtgat
gtgcatccaacgcattatgggcgtatctgtcctgctgaaacatcagaaggtcacaatata
ggattagttagttctcttacgtcgtttgcgcgtgttaatgcatatggttttattgaaacc
ccatatcgtaaagtttgtgatggtaaggttacaaatgatgttgtctatctttctgcgatg
gaagaagaaaatcgttatattgcacaagctaattcgtctcttgatgaggatggttcgttt
acggaagagttagtcttttgtcgttgtgcaggagaagaaattcttgtgcctcgggaaaaa
attgatttcatagacgcctcgcctaagcaagtggtttcaatagcggcttctctcattccg
ttcttagagaatgacgattccaatcgtgtccttatgggctgtaatatgcaacgtcaagca
gttcctttattaaaggctgaagccccttttgtcggtaccggtatggaatcggtcgttgct
aaaagttcaggggctgctattgttgcaaagcgtgctggaatcgtagaacaggttgatgcg
atacgtatagtgattcgttcggtggaaggagatctagatccttctacatccggagttgat
atttatcggttgatgaaatttcagcgttctaatcaaaatacttgtgtcaaccagcgtcca
ttggtgaaagttggtgatgaggttcgcagaaatgatattatagcagacggtccatctaca
gatttaggagatctggctcttggtcgtaatatgctcgtcgcttttatgccttggcatggg
tataactttgaagattctatgttgatatctgagcgtatggtttctgaagatgtgttcact
tctattcatatagaagaatttgaggtgatggcacgtgatactaagttaggaccagaagaa
atcactcgtgatatacccaatgtttcggaagagggattaaagaatattgacgaatgtgga
atcatctgtgttggagctgaagttaatcctggtgatattttagtaggaaaaataactcct
aagggtgagagtcctatgacacctgaagaaaaacttctgcgagctatttttggtgaaaaa
gctgtagacgtgcgtgatacatccttgcgtgtgccttctggggtttctggtacagttgtc
gacgttcgtatttttaatcgtcatggtattgataagaacgaacgttctatatctgttgag
cgagaacaaattgagctccttgctcgagataaggatgacgaacaagtaattctagatcgt
aatatttatagccgtttgatggaaattttatgtggtcagaatgcagtatctggccctaag
ggttttaagaaatctacagttctttccagtgatttgatttcagaatatccccgttctcaa
tggtggcagttcgctgttcaagatgagaaagtacagcgaaatgttgaatccttaaaagtt
caatatgaaacttctaaatcgattcttgaagatcgtttcaaaaataagattgagaagatt
caatggggggatgatatgcctcctggagtcttaagagtggttaaggtctttgttgctatg
aagcgtccaattcagtcaggggataaaatggctggacgtcatggtaataagggaattgtt
tctcgcatattgccttgtgaggatatgccttttcttaaggatggtactcctgtagatatc
gttctcaacccattgggcgttccttctcgtatgaatgttgggcagatttttgagacgcat
cttggatgggcatgtgttggtcttggaaagaagattaaaagtcttattaacgattataag
gccaatggtgatatcagtccgttacgtagttttctagaaaaagtgataggaacaggatct
catactgagaagatatcggattatgatgatgattctgtcttacgtgtagcagaacagtgg
aaatcaggtgtacctgtttcaacgcctgtttttgatggggctgatgaagaagctattaat
tctatgcttcgtatggctgatttggatgagagcgggcaatctattctttatgatggtctt
accggtgaaccatttgatcggcctgttactgttgggtatatctacatgttgaagcttaat
catatggtttcggataaagtttatgctcgttctacaggtagttactctcttgttacacaa
cagcctttaggtggaaaatctaatagaggtggtcagcgtttaggggagatggaagtatgg
tgtatacaggcttatggtgctgcctacgttttacaagaaatgcttaccattaagtctgat
gatgtcgtgggtcgtaccagagtgtatgagtctattgttgcagggaatgatacctttgaa
actggtacacctgagagttttaatgttctagttaaggaaatgcaagctttgggcttaagt
attgatttagaaaattcacgcacgaaaaatagtgcgaaaatggaagaaattcctgatttt
aataaatgtgaattaaagtaa
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