Candidatus Liberibacter asiaticus psy62: CLIBASIA_04000
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Entry
CLIBASIA_04000 CDS
T00948
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
las
Candidatus Liberibacter asiaticus psy62
Pathway
las03410
Base excision repair
las03430
Mismatch repair
las03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
las00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLIBASIA_04000 (recJ)
03430 Mismatch repair
CLIBASIA_04000 (recJ)
03440 Homologous recombination
CLIBASIA_04000 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
las03400
]
CLIBASIA_04000 (recJ)
DNA repair and recombination proteins [BR:
las03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLIBASIA_04000 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLIBASIA_04000 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLIBASIA_04000 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF34_NIF3
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
ACT57374
UniProt:
C6XG71
LinkDB
All DBs
Position
878507..880309
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AA seq
600 aa
AA seq
DB search
MNDQAFLGVECSISGFRWVSLLGQEGINRALAITQKHAIPDIVARVLVNRNVSIDYAKDF
LNPSIRLLMPDPLILTDCDKAARRIVQAIYNSEKIMIFGDYDVDGAASVALMMRFLSHCS
VNANMYIPDRIVDGYGPNPSLMEKFINEGAQLIITVDCGSTSYDALQYATNQGIDVIVID
HHQVKSEEIPAYALVNPNRLDDLSGQGHLCAAGVVFLVLVLIYRILRQDNKVPLNFDLLS
LLDLVALATVCDVVPLIGLNRAYVVKGLMVARRQGNPGLKALIERVNISSPITAENLGYM
IGPSINAGGRIGESNLGSRLLISDDSQELEMLAMKLDVLNQNRRLMESAMLEQAEAKVLT
QCDDIQQASVIVVEGDRWHPGIVGLLAARLKEKFGRPSFAISFEEDGKGIGSGRSIEGFD
IGKMVSFAVEEGILVKGGGHAMAAGLTVERVNFGRLCDFFQKFAHNIVPALITTPVFKID
GVLNASAVNIALIDMLESAGPYGAGNPNPVFAFPNHKLQSIRVVNLAHLQMTFESQDSET
LQAIAFRVYGTPLGEFLMQSRGKRMHVTGHLCVNYWRGSKRCQLRVLDASPVEGHHFAKK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatcaagcttttttaggggtagagtgttctatttctggctttcgatgggtatct
ttattgggacaagaaggaattaatcgtgcccttgccattactcaaaaacatgcaattcct
gatatcgttgctcgtgttttagtgaaccggaatgtttccattgattatgctaaagatttt
ttaaatccgtctattcgcttgctcatgcctgatcccttaattctaactgattgtgataaa
gcagcacgtcggatagttcaggcgatttataattctgaaaaaataatgatctttggtgac
tacgatgtagatggtgctgcttcagtagctctaatgatgcgatttttatcacattgtagc
gttaatgctaatatgtatataccagatcgtattgtagatggatatggacctaatcctagt
ctcatggaaaaattcataaatgaaggagcacagctgattattacagtagattgtggatct
accagctatgatgctttgcaatatgctactaatcaagggattgatgtgattgttattgat
catcatcaagtaaaaagtgaagaaattcctgcttatgcattagtcaatccaaaccgttta
gacgatttatctggacaaggtcatttgtgcgcagctggcgttgtttttcttgttttagtt
ttgatttatcgtattttacggcaagataataaagttccactaaattttgatttattgtct
ttattagatcttgtagctcttgccactgtatgtgacgttgttcctttaattgggttaaat
agagcctatgtcgtcaaaggattgatggttgctcgtaggcaaggaaatccaggattaaag
gcgttaattgaacgcgttaatatttcttctcccataacagccgagaatttaggatatatg
ataggaccatctattaatgcaggagggcgtataggagaatctaaccttggaagtcgtttg
ttgatttcagatgattcacaagaacttgaaatgcttgcgatgaaattggatgttctcaat
cagaatcgtcgtttgatggaatctgcaatgttggaacaagcagaggcaaaagttttaaca
cagtgtgatgatattcaacaagcttctgttattgtagtagaaggagatagatggcatcct
ggtattgtggggttgttggctgcacgtttgaaagaaaagtttggtcgaccatctttcgca
atttcttttgaggaagatggaaaaggcattggttcaggacgctctattgagggttttgat
attggaaaaatggtgtcgtttgcagtagaagaagggattctggtaaaaggtgggggacac
gctatggcagctggtttgaccgtggaacgtgtaaactttggtcgtttatgtgattttttt
caaaaattcgcacataatatagttccagctttaattacaactccggttttcaagatagat
ggggttcttaatgcttctgctgtgaatatcgcattaattgatatgcttgaatcagcagga
ccatatggtgcggggaatccaaatcccgtttttgcatttcctaatcataaattacaaagt
attcgcgttgttaacttagctcatctacaaatgacgtttgaatcgcaggattcagaaact
ctacaagcaattgcctttcgtgtttacggtacacctctgggtgaattcttaatgcaatct
cgtggaaaacggatgcacgtcacaggtcatttgtgtgttaactactggagagggagtaag
cgttgtcagctacgtgtattagatgcttcccctgtagagggtcatcattttgccaaaaag
tag
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integrated database retrieval system
