Candidatus Liberibacter asiaticus psy62: CLIBASIA_04230
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Entry
CLIBASIA_04230 CDS
T00948
Symbol
mdf
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
las
Candidatus Liberibacter asiaticus psy62
Pathway
las03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
las00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLIBASIA_04230 (mdf)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
las03400
]
CLIBASIA_04230 (mdf)
Enzymes [BR:
las01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLIBASIA_04230 (mdf)
DNA repair and recombination proteins [BR:
las03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLIBASIA_04230 (mdf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
Cas3-like_C_2
DUF7053
RecG_dom3_C
AAA_30
UB2H
CHASE5
Motif
Other DBs
NCBI-ProteinID:
ACT57420
UniProt:
C6XGB7
LinkDB
All DBs
Position
938109..941672
Genome browser
AA seq
1187 aa
AA seq
DB search
MIFGSDIERISEKYCKKITLSPVIDGTEGFILAEIARLGLSLVYICSDERILINLKKILT
LVVPDIRVIIFPAWDCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMC
RSVNIMSIKDYKLSIQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPT
KKYPVRLDFFGNTIDSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANF
GTTTQEDPLYVAISQGRRYPGMEHWLPFFYQSMETIFPYLSEFCIITDPLVKETARKRSQ
LIQDYYEARLQYSSDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAH
NRVVHLNAFPGKSWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGA
LQHLIHLIESHGFKKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLLGK
KIARRVVRKKNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYA
DNAKLFVPVENIDLISRYSTEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKR
AIHSVPPLMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKT
EIALRAAFIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALH
KKSITEGQVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLS
ATPIPRTLQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYV
CPRLSDLEKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGL
DLPKANTMIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQS
LNTLGAGFQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVES
DWSPQVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVI
HLLKVVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQN
LVFDCLLPTINQRFFEAKRIITHLINMTNPEIQTPDSGDLSLKVKSL
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgatttttggatccgatattgaaagaattagtgaaaaatattgtaaaaaaatcaccctt
tctccagtaatcgatggtactgaagggtttattctagcagaaatagcacgtttgggtctc
tctctcgtttatatttgttctgatgaacggattctaatcaatcttaaaaaaattcttaca
ttggtcgttccagatattagagttatcattttcccagcttgggattgccttccatatgat
cgtgtatcaccttctccttatgtggtaacacggcgtctttcttgtatttctaatcttgtt
tctttcaattcatctaaagaaacaattattgttctcacaactgtcagtgctgtaatgtgt
cgttctgtcaatattatgtcgatcaaagattataagttatcaatacaatctaaagatcaa
attgatatggcaaaggtgatagaaaaattagaaaccaacggatttcaaagagttaatgcg
gtatataaagtaggggaatatgctgtacgaggaggtattttagatgtttatgagcctact
aaaaaatatcctgtacgtctagatttctttgggaatactattgatagtctccgtcttttt
gattctagcacgcaacggacaatcagagaaatttctatctttgaaatcaatactttaagt
gaagttatgcttacttcccaaaatataagtcgttttcgtgaaaattatcttgcgaatttt
ggtacaacaacgcaggaagatcctctctatgttgctatttctcaaggacgtcgatatcct
ggcatggagcattggttgccttttttctatcaaagtatggaaacaattttcccatattta
agtgaattctgtataataaccgatcctttggttaaggaaacagcgcgcaagcgttcccaa
ttaattcaagattattatgaagcgagattgcagtattcttcggataaaaaacagtattcc
gtttataaacctattgcgccagaaaaactctacctcaattatcagcaatttgatgcatta
atccaaactactcacaagttggttcagatgacggcttttaaccagcaagaaaccgctcac
aatcgtgttgttcatctaaatgcatttccaggaaaatcttgggtaccatctgctgtacaa
aaaattgaatcgcaagataactgggaatcaggcggtagatttgataaatttttgagccat
gttgctcagcaagctcaaaaagggataaaaacaatcataagtgcctcttcacaaggagca
ttgcaacatttaattcatcttatagagagtcatggatttaaaaaaataaagaagatcaat
actttaacggaaataaattctctactaaaagaagaaattgcagcagtaattcttcctatc
aatcaaggatttgaaacaaaacatatgatccttgtgaccgaaacagatttgctaggaaag
aaaatagcacgtcgtgttgttcgaaaaaagaacgttcatgcacagtctttctttgattct
tctaatatcgaagaaggagctattattgttcatgcagaacatggaatagggcgctttgtg
cgtttatatagtattgaagtatccggaacattccatgattgtcttgaattgcattatgct
gataatgcaaaattatttgtgccagtagagaatattgatttaatctcccgatatagtaca
gaaattactacagtaacgcttgataagttagggggatctgcttggaaaacgcgtaaagct
aacttaaaaaaacgtcttgaagatttagcacaaaaacttgtcgacattgccgcaaaaaga
gccattcactccgttcctccactgatggtttcacaggatttatatagtcaatttataaaa
agatttccccacgttgaaacagaagatcaagaaaaagctattgatgctgtaatccaagac
ttgtctagtggtcggctcatggatcgattaatttgtggcgatgtaggatttggaaaaaca
gaaattgcgttgcgagccgctttcattgccgtcatgaatggattacaagtagcagttatt
gctcctacaacgctgttagtgcgacagcactttcgattgttttctgaacgttttcaaggt
ttttcggtgcgtattgccagtatttcacgtttcgtacaaacaaaagaagcagctctccat
aaaaaatctatcacagaaggtcaggtagatattgttattggtacgcatgctttattaaat
ccaaagatcacctttgctaatcttgggttgattattattgatgaagaacagcattttggt
gttaaacataaggaagcattaaaagaaactcatactggcgtacatgtcttaactctttcg
gcaacacctattccgcgtactttgcaattggcaataacaggcgtgcgagagttatcgttg
attagcatgccgccgattaatcgtattgcttgtcgaacttctatttcaatttttgatccc
ttagtagttcgtgagaccttaatgcgtgaatattatcgaggaggacaaagtttttatgtg
tgtcctcgtctctcagatttagaaaaatgttatacctttttacagtcagaagttccagag
ctcaaaattgcaatggcacatggacaaatgtctcctaaaaatcttgaagataaaatgaat
gctttttatgaagggcaatatgatgtattgctttccacttctattgtggaatctggatta
gatttgccaaaagctaatacaatgattgtacaacgagctgatatgtttggtttagctcaa
ttatatcaactacgtgggagagtaggtcgatcaaaaattgcatcatttgctttatttcta
ttgccagaaaatcgtcctttaactgctgctgcccaaaaacgtctgagaattttacagtcc
ttgaatactttaggagcaggatttcaacttgcgagttatgatcttgatattcgtggtaca
gggaatcttttgggagaagagcagtccggtcatattagggaaataggtttcgagttatat
caaaaaatgctggaagaaactgttgcgtccattaaaggacaaaaagacttggtggagagt
gattggtctccccaggttctcatagaggcatcagtcatgataccagaaagttatgtttct
gatattaatttacgcctttcgctatatcggcggcttggtaatattacggatcatgctgat
attagtcattttaaagaagaaatggtagatcgatttggtccattaccgattgaagttatt
catttattaaaagtagtctttctcaaattgctttgtcgcattgctaatatcgataagatg
gatataggtctcaaaggtattattatacagtttcgccataagacatttagtaatccagaa
gcattattgcagtacattgcgcaacaaaaaggaaagatcattattcgtcctgatcagaat
cttgttttcgactgcttgttaccaactatcaatcaacgattttttgaggcaaaacgcatt
attactcacttgattaacatgacaaatcctgagatacaaacacctgatagtggtgattta
tcactgaaggttaagtcactatag
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