KEGG   Lawsonibacter asaccharolyticus: L9O85_00625
Entry
L9O85_00625       CDS       T07961                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lasa  Lawsonibacter asaccharolyticus
Pathway
lasa02024  Quorum sensing
lasa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lasa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    L9O85_00625 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    L9O85_00625 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lasa03019]
    L9O85_00625 (hfq)
   03036 Chromosome and associated proteins [BR:lasa03036]
    L9O85_00625 (hfq)
Messenger RNA biogenesis [BR:lasa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     L9O85_00625 (hfq)
Chromosome and associated proteins [BR:lasa03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    L9O85_00625 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM Phage_Hfq
Other DBs
NCBI-ProteinID: UMM46958
LinkDB
Position
complement(125967..126203)
AA seq 78 aa
MQKTNNLQEIFLTQVRRDRRPVTIFLMNGFQMRGYVTGFDAFTVVLTSDGKQQVIYKHAI
STIVPERPVPLCQPGELE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgcagaaaaccaacaatcttcaggagatcttcctcacccaggtccgccgggaccgccgc
cccgtcaccatctttctgatgaacgggtttcagatgcggggctatgtcaccggctttgac
gccttcaccgtggtcctcaccagcgatggcaagcagcaggtgatctacaagcacgccatc
tccactatcgtcccggagcggcccgtccccctctgccagcccggcgagctggagtaa

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