Candidatus Liberibacter asiaticus Ishi-1: CGUJ_00105
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Entry
CGUJ_00105 CDS
T03607
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lat
Candidatus Liberibacter asiaticus Ishi-1
Pathway
lat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CGUJ_00105 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lat03021
]
CGUJ_00105 (rpoC)
03400 DNA repair and recombination proteins [BR:
lat03400
]
CGUJ_00105 (rpoC)
Enzymes [BR:
lat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CGUJ_00105 (rpoC)
Transcription machinery [BR:
lat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CGUJ_00105 (rpoC)
DNA repair and recombination proteins [BR:
lat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CGUJ_00105 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
BAP25900
LinkDB
All DBs
Position
complement(12126..16322)
Genome browser
AA seq
1398 aa
AA seq
DB search
MQQEVMRFFNPWTDDRGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECICGKYKRMKYKGIICEKCGVEVTLSSVRRDRMAHIDLASPVAHPWFLKS
LPSRISTLLGMSLRDVERVLYFESYVVVDPGLSSLEKYQILTEEEYVEAVSQFGQDQFIA
MMGADAIYELLIALDLQNLALTLRDQLSKSSSIFRRKKIIKRLKIVDSFITSGNNPGWMI
IRKLPVLPPDLRPLVALDFGRFAASDLNDLYRRVIGRNNRLMRLKSLHAPEIIIRNEKRM
LQESVDALFDNGRHKRVVTGANRRPLKSLSDMLKGKQGRFRTNLLGKRVDYSGRSVIVAG
PELQLHQCGLPKLMALELFKPFLYAQLEKKGYVSTVKQAKKFVEKERPEVWDVLAEVVHQ
HVVLLNRAPSLHRLSMQAFEPKIISGKAIQLHPLVCAGYNADFDGDQMAVYAVISPEAQL
EARVLMLSTNNLLHPASGAPVTVPSQDMVLGLCYLSTVHEGDPGEGMLFADMGEVYHALE
NKIVTLHSKIRGRYKSVDKDGNSISKIYDTTPGRMIIGEILPRHHEISFDICNQEMIKKN
ISAMVDTIYRHCGQKSTVAFCDDLMRLGFRYACSSGISFGKDDIIVPESKEKIIAEADKM
VKEYENQYNDGLITRGEKYNKVVDLWGKTTDKVTEEMMARIKRVEFDPETGRQKKMNSIF
MMSHSGARGSIHQMRQLGGMRGLIAKPSGEIIESPIRSHFKGGLCGFEFFQSCVGGRKGL
LDVVMRTASSGYLSRRLVDVAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRT
ALDDIINPLTNECIVKAGQLILESHVNEIEKCGIRSVRIRSALTCESSRGVCVLCYGRDL
ARGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHLGGAVTVMDRSFIESPCDGIVKIKNRN
VCRNSTNDLISMGRNTTLQILDMSGQEQYSHRIMYGAKLFVDDGGVIECGQRISEWDPHT
FPIITEVSGTVGFEDLVDGISVIESIGESTGIAKRKVIDWRFASRSQNLKPAIVVTDENG
VVLKSARETDARWFLPVDALLSVSPGQKVSTGDVLARLPISSAKTKDITSGLPRVAELFE
ARRPKNHAILAEISGTIRIKRNYKNKSRVVIEPFEDGVEPAEYFIPKNKHFYLQDGDHVE
KGDYILDGNPVPQDILRIKGVEALASYLINEVQEVYRLEGVAINHKHIEVVVRHMLQKVE
ITDPADTEYILGDNVDRIEVEELNRSLAQQGKKLVSFSPILQGITKASLQTKSFISAASF
QETTKVLTEAAIAGKVDTLDGFKENVIVGRSIPAGTGAILHEKRRVAMNRDQMILKERSN
FSQNEDLKNTAIQGSIAE
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaagaggtcatgagattttttaatccgtggacagatgatagaggatttgattca
gtcaggatctcaattgcctctccagctaagattgcgtctttgtcttatggtgagataaaa
aagcctgaaacaattaactaccgtaccttcaagccagaaagagatggtttgttttgtgct
cgtatttttggacctattaaagattacgaatgtatatgcggcaaatataaacgtatgaag
tataaggggattatttgtgaaaaatgtggtgttgaggtaacactatcctctgttcgccga
gatcgtatggctcacatcgatttggcttctcccgttgctcatccttggtttcttaagtct
ttgccatctcgtatatcgacgttgcttgggatgagtttaagggatgtagaacgtgtgtta
tatttcgagagttatgtcgtcgttgatcctggtttgtcttcgctagaaaaatatcagatt
ttaacagaagaagagtatgtcgaagcagtaagccagtttggtcaggatcagttcattgct
atgatgggggctgacgcgatatatgaattattaattgcattggatcttcagaatctggct
cttactttgcgtgatcaattgagtaaatcttcttctatttttagaagaaaaaagataata
aaacgtcttaaaattgttgatagttttataacttcaggtaataatcctggatggatgatt
ataaggaagcttcccgttcttcctccagatttgagaccattggtagctcttgattttggg
agatttgccgcttctgatttgaatgatttataccgccgagttattggtcggaataatcgc
ttgatgagattgaagagtttgcatgctccagaaattattattcgtaatgaaaagagaatg
cttcaagaatctgttgatgctctatttgataatggacgtcataagcgtgtggtcactggt
gcgaatagacggcctttgaagtctctatctgatatgttaaaaggtaaacaggggcgcttt
agaacgaatcttctggggaaaagagtcgattattctggacgtagtgttattgttgcgggt
ccagagttgcaattgcaccaatgtggtctccctaaattaatggcgcttgaattgttcaaa
ccctttttatatgcacagttagaaaaaaaaggatatgtttctactgttaagcaggccaag
aagtttgttgaaaaagaaaggccagaagtttgggatgtgctagcggaagtagtccatcag
catgttgtattgcttaatcgtgctccgagtttgcatcgtttaagtatgcaggcttttgaa
cctaaaattataagtggaaaagctattcaactccatcctttagtatgtgctggatataat
gctgactttgatggagatcaaatggctgtctatgctgtgatttctcctgaagcacagttg
gaagcacgtgtgttgatgttgtccacaaataatcttctacatcccgcaagtggggcacca
gttacagtgccttcgcaagatatggtattaggactttgttacttatctactgttcatgaa
ggtgatccaggcgaagggatgctctttgctgatatgggtgaggtgtatcatgcgcttgaa
aataaaatagttactttgcattctaaaatccgtggaaggtataagagtgttgataaagat
ggaaattcaatttcgaagatttatgatacgactccagggcgcatgattataggtgaaata
ttacctcgtcatcacgaaatttcgtttgatatttgtaatcaggagatgattaagaagaat
atttccgctatggtggatacgatttatcgccattgtggacagaaaagtacagttgctttt
tgtgatgatcttatgcgtttgggattccgttatgcttgttcttctggaatttccttcggt
aaagatgatataattgttcctgaatcgaaggaaaaaattattgctgaagccgataagatg
gtgaaagaatatgagaatcagtataatgatgggttgattacgcgtggggaaaaatataat
aaagttgttgatttatggggaaagactactgataaagtcactgaagagatgatggcacgt
attaaacgagttgaatttgatccagagactggacgtcaaaaaaagatgaactctatattc
atgatgtctcattctggtgctcgtggttctatacatcaaatgcgtcagcttggtggaatg
agaggtttgatagcgaagccatctggggaaattattgaatcaccgattcgttctcatttt
aaaggtggtctttgtggatttgaattcttccaatcttgtgttggtggtcgtaaaggattg
cttgatgttgtgatgagaactgctagttctggttacttaagtcgtagacttgtagatgtt
gcgcagaattgcgttgtcaatcaagttgattgcaatacaaaaaagggtttgactattacg
cacatagtagattctggacaagtggtttattcccttggaagtcgagtcctaggacgtacg
gctcttgatgatattattaatccattgacaaatgaatgcattgtgaaggctgggcaacta
atacttgaatcacatgttaatgaaattgaaaaatgtggtattcgttctgtaaggattcgt
tctgcgttgacttgtgaatctagtaggggagtttgtgtgctttgttatggtcgtgatctt
gctcgaggatcgcttgttaacgtaggtgaagctgttggtgtaattgctgctcaatcgatt
ggtgagcccggaacacagttgacgatgcgtactttccacctcggaggtgctgtaacagtt
atggatcggtctttcattgagtctccatgtgacggaatagttaagatcaaaaatcgtaat
gtttgtcgtaattctacaaatgatctcatttctatggggcgtaatacgacacttcaaatt
ttagatatgtcaggacaagagcaatattcacatcgcatcatgtatggtgctaaattattt
gttgatgatggtggtgtaatagagtgtggacaacgtatttccgaatgggatccccatact
tttccaattataaccgaggtttctggaacagtgggtttcgaagatcttgtagatggtatt
tctgtaatagaaagcattggcgagtctacgggtattgctaaacggaaagttatcgattgg
cggtttgctagtcgaagtcaaaacttaaaacctgcgatcgttgttacagatgaaaatggt
gttgtattaaaatctgctcgtgaaacagatgctcgctggttcttgccagtagatgcgctt
ctttcagtatctcctggacaaaaagtttcgacaggggatgttctagctcgtttgccaata
tctagtgctaagacaaaggatattacgagtgggttgccgcgggttgctgagctttttgaa
gctcgtcgtcccaaaaatcatgctatattagcagagattagtggaactattagaataaaa
agaaattataagaataagtctcgcgtggtaattgaacctttcgaagatggtgttgagcct
gctgaatactttattccaaaaaataaacatttctatctgcaagatggagatcatgttgaa
aaaggtgattatatccttgatgggaatcctgtcccacaagatattttgagaattaagggt
gtggaggcgttggcatcttatcttattaatgaggtacaagaagtttatcgtcttgagggt
gttgcaatcaatcataagcacatagaagttgttgttcgtcatatgttgcaaaaggttgaa
attactgatcccgctgataccgagtatatattaggggataatgttgatcgcattgaagta
gaagagttgaataggagtcttgcgcaacaagggaaaaaattggtttctttctctcctatc
cttcaaggtattacaaaagcttctctacagactaagtcttttatatcagcggcttctttt
caggaaacaacgaaagttcttactgaagcagctatcgctggtaaagttgatactttagat
gggtttaaagaaaatgttattgtaggtcgtagtattcctgctggaacaggggctatttta
catgagaaacgacgtgttgctatgaatagagaccagatgattctaaaagaaagatctaat
ttttcgcagaatgaagatttgaaaaatacggctattcaggggagtatagcggagtaa
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