Candidatus Liberibacter asiaticus Ishi-1: CGUJ_00335
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Entry
CGUJ_00335 CDS
T03607
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lat
Candidatus Liberibacter asiaticus Ishi-1
Pathway
lat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGUJ_00335 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lat03400
]
CGUJ_00335 (uvrA)
DNA repair and recombination proteins [BR:
lat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CGUJ_00335 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CGUJ_00335 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_25
nSTAND1
RsgA_GTPase
AAA_16
DnaJ_CXXCXGXG
AAA_33
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BAP25942
LinkDB
All DBs
Position
58499..61378
Genome browser
AA seq
959 aa
AA seq
DB search
MSKIKNISIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAFDTIHAEGQRRYVESL
STYARQFLGTIKKPDVEQIDGLSPTISIEQKNTSHNPRSTVGTITEIHDYLRLLFARIGI
PHSPTTGLPIESQTISQMADRLLSFEQGTRMYLLAPIVRNRKGEYKKELAEILKKGFQRV
QIDGVFYHISDAPDLDKKYKHTIEVVVDRIVVHENIRERIVNSLRTCLQLTNGLAIATIA
DSTFHNDEKTSPNLSHNSSDHILFSENLSCPVSGFSIAEIEPRIFSFNNPAGACHHCDGL
GTRQKVDEKLVIPNSKLALNNGAIAPWSNPLSAYHTNILTALGKDLGFSINDSWDLLSNE
NQQILLYGTKKNSIALARHKKSSYSNLSFRGIIPTLEKRWSEADSSLLQEIIQRYMSSSP
CTICHGYRLKDESLAVKIAGKHIGEIADMSIKKAQIWFEQLPTQITQKANKISESILKEI
QKRIHFLVEIGLDYLTLSRNSNMLSNGESQRIRLASQIGSALTGVLYILDEPSIGLHQRD
NTKLINTLKHLRDTGNTVIVVEHDEETMLAADHIVDIGPEAGINGGKIVAEGSPSQIIAH
PTSLTGKYMSGKMSIKIPEKRRQYNPNRMIHVINARSNNLKNVTGSIPLGLFTAITGISG
GGKSTFLISTLYKAAARIIMGSKYNPGIYDRIDGLEYIDKVVSINQSPIGHTPRSNPATY
VGAFTPIRDLFSNLPESKACGYKAGCFSFNVKGGRCEVCEGNGVIKIAMHFLPDVYITCD
VCQGQRYNPETLQIRFKDKSIADVLSMTVDESLDFFAAIPTIHNKLTTLKEVGLGYIKIG
QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS
IIVIEHNLEVIKTADWILDFGPEGGDGGGEIIASGPPEAIAKEPLSYTGKFLKSILKNK
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaatcaaaaatatttccattcgcggtgctcgggaacacaatcttcagaacatt
agcatagaattgccacgcaataaattaattgtcatgactggtgtttctggatcgggaaaa
tcctcactagcttttgatacaattcatgccgaaggacaaagacgatatgtagaaagtctc
tctacatatgcacgacaatttttaggaaccatcaaaaaaccagatgtagaacaaattgat
ggcttatctcctaccatatccattgaacaaaaaaatacatctcataatcctcgttctact
gttggtaccataaccgaaatccatgattatttgcgcttactgtttgcacgaataggcatt
ccccattctcccacaacaggactccctatagaaagccaaactatcagccaaatggcagat
cgccttctttcatttgaacaaggaactcgcatgtacttgctagctcctatagtacgaaat
cgcaaaggagaatataaaaaagagctagcagaaatactcaaaaaaggatttcaaagagtg
caaattgatggggtgttttatcatatatccgacgcacccgaccttgataaaaaatacaaa
catactatcgaagttgttgtagatcgcattgtcgttcatgagaatatcagagaaagaatc
gtcaatagcctgagaacttgtctgcaattaaccaatggtttagctattgccactattgcg
gattctactttccataatgatgaaaaaacaagcccaaatctgtctcataactcctctgat
catattcttttttctgaaaatctttcctgtcctgtatcaggattcagtatcgcagagata
gaacctcgtattttttctttcaataacccagcaggtgcctgccatcattgcgatgggctg
ggaacaagacaaaaagtagatgaaaaacttgtgatccctaattcaaaattagcattaaat
aatggcgccatcgctccttggtcaaatcctttatccgcatatcataccaacattctcacc
gctttagggaaagatctaggattttctatcaatgatagttgggatcttttatctaatgaa
aatcaacaaatacttctttacggaacaaaaaaaaacagcattgccctagctcgtcataag
aaatcttcatattccaatctatccttcaggggaatcattccaaccttagaaaaacgttgg
agtgaggcggattcctcacttctccaagaaataatacaacgatatatgtcttcatctcct
tgcacaatttgtcatggatatcgtcttaaagatgaatcactcgcagtcaaaattgccggc
aaacatatcggagaaatcgccgatatgtcaattaaaaaagcacaaatttggtttgaacaa
ctccccacacaaatcacacaaaaagccaataaaatatcagaatctattctaaaagaaatt
cagaaaagaattcattttcttgtggaaataggacttgattatttaactttatcacgtaat
tccaacatgttatcaaatggagaaagtcagcgtatacgcctcgcatcccaaataggatct
gcattaaccggagtgctttatatattagacgaaccctctataggcttgcaccaacgtgat
aatactaagctaatcaacactctcaaacatcttcgcgatacagggaatactgtgatcgtt
gttgaacatgatgaagaaaccatgctcgctgccgatcatattgtagatataggaccagaa
gctggtattaatggagggaaaatcgtagcagaaggctctccatctcaaattatagcacat
ccaacctccctaactgggaaatatatgtctggcaaaatgagcattaaaataccagaaaaa
agacgccaatataatccaaatcgaatgattcacgttatcaacgcacgaagcaacaatttg
aaaaacgtcacaggatctatccctcttggattatttaccgcaattactggaatatccgga
ggaggaaaatctacttttcttatatctactttatacaaagcagctgcgcgcattattatg
ggatctaagtataatcctggaatatatgaccgtattgatgggcttgagtatatcgacaaa
gttgtcagcatcaatcaatctcctatcggtcatacacctcgctctaatcccgcaacttat
gttggagcgttcacaccaatccgcgatttgtttagcaacctacctgaatccaaagcatgt
ggatataaagccggatgtttttctttcaatgtcaaagggggaagatgcgaggtttgtgaa
ggaaacggtgtaataaaaattgcaatgcacttccttccagatgtatacatcacatgtgat
gtatgccaaggacaacgctataatcctgaaaccctacaaatacgcttcaaagataaatca
atagccgatgttctctctatgacagttgacgaaagcttagatttttttgcggctattccc
acaatacataataaattaacaaccctcaaagaagtaggcctgggatacattaaaattgga
cagtcagccaatacactatcaggaggagaatcgcaacgcgtgaaacttgccaaagaactc
tcgaaacaagctacaggcaacaccctctacatattagatgaacccacgactggtctgcat
tatcatgacatagccaaactattgaatattttgcacacactcgttgacagaggaaactct
attattgttatcgaacataatctagaagttatcaaaacagctgattggattttagatttt
ggaccagaaggaggagatggcggtggagaaatcatcgcatctggacccccagaagcaata
gccaaagaacccctttcatatactggaaaatttctcaaatctatcttaaaaaacaaatga
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