Candidatus Liberibacter asiaticus Ishi-1: CGUJ_00870
Help
Entry
CGUJ_00870 CDS
T03607
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lat
Candidatus Liberibacter asiaticus Ishi-1
Pathway
lat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lat00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CGUJ_00870 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lat03021
]
CGUJ_00870 (rpoD)
Transcription machinery [BR:
lat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CGUJ_00870 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAP26048
LinkDB
All DBs
Position
complement(170136..172205)
Genome browser
AA seq
689 aa
AA seq
DB search
MRDKVKAMTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFL
PPDEVSSEQMEDTVAMLSNMGINVVDGDDLEDEEGSEDSLDLASSASNSSVFLQKRKDSA
DRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDE
LNDGTTLLREIIDLEACIGPESKGGFFHGTEGHSYQKREDSSQEKERDDVQETEGDIESA
AKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCALDEIAEVYRE
LRSLQDNAVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNE
GELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFVACEVDSILKIRNEI
KSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDL
IQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVV
RTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIE
DKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTR
ERIRQIEAKAIRKLKHPSRSKKLRSFLDG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgagggataaggtaaaagcgatgacaataggaaagaagagaaatagagattctgatagt
gagcatgaggattctgatgattctctagtttttgatttttccgatgattcttggaaaaag
atgatcaaacttgctagacagcgcggctatgtgaccatagaagagctaaatgcttttttg
cctcccgatgaggtgagttctgagcaaatggaagatacagtggctatgttatccaatatg
gggattaacgtggttgacggcgatgatttagaggatgaggagggatctgaggattctctt
gatctcgcaagtagtgcaagtaattcgtccgtatttttgcaaaaacgcaaagattcggct
gatcgtagtactgatgatccggttcgcatgtatttgcgtgagatgggttccatagagttg
ttatcccgtgagggtgaaattgctatagctaaaaggattgaggcagggcgagctatgatg
atggcaagtctatgtgaaagtcctcttactttccaggctcttattatttggcgtgatgag
ttaaatgatggcactacgcttttgcgtgagattatagatttagaagcatgtattgggcca
gagtcaaaagggggattcttccatggaacagaaggacattcctatcaaaaacgagaggat
agttctcaagaaaaggaaagggatgatgttcaagaaacagagggtgatattgagagtgct
gcaaaggtaagtaaagatgatcgtagtaaggttgattctcctccagaaaatgctgaaaat
gacgaaagaaatttagatgaagatgaggatgattctgcgcatactctttctgcaatggag
gatcaattaagaccgaaagtaatgtgtgcgcttgatgaaattgccgaagtttatcgggaa
ttgcgttcgcttcaagataatgcggtgaatggtcaaaaagatgaaaaatcttctgtcaaa
tgcaaagtattaaaagagaaattggttaaattagttggatcactgtcactgaatcaaagt
cgcatcgatttattagtggagcagttatatgacatttcgaagcggattatgcataatgaa
ggtgagttgttacggttggctcaatcttatggaattaaacgagatgtttttttagagcgc
catcaagggcgcgaactggaccctcattgggtgagttatgcaaaagattttcctgaaggg
gagtggaagaattttgttgcttgtgaagtggattccatcctcaaaattagaaatgagatt
aaaagcatctcagttgaaacaggaatatctatttctgaattccggcatattgtttcgatg
gtgcgtaaaggagagtgcgaagccagtattgccaaaaaagaaatggtagaagctaatttg
cgtctcgttatttctgttgctaagaaatatacaaatcgtggattgcaatttttggattta
attcaagaaggcaatattggtttgatgaaagctgcggaaaaatttgattggtgtttgggt
tataaattttcgacatatgcgatgtggtgggttaaacaagcaattacgcgttctatcgca
gatcaatcatgcacgatcagaatacctgtccatatgcgtgataaaatccacaaggttgtt
cggacagcgcgtaggatgtcaaataaaatcaaacgtgagcctacgcctgaagaaatagca
aaaaaactcgcaatgcctgtggaaggagtgcgaaaagttttaaaaataactaaagaacca
atctctctagaaacgccgataggtgatgaggatacttctcatcttggagattttatagaa
gataaaaatgcagtctctcctttggattctgctatccaagcgaacttgcgtgaaacgacc
acacgcgttcttgcttctttgacgccacgggaagaaagggtattgcgtatgcgttttggt
atagggatgaatacagatcatacgctagaagaagtaggtaaacaattttgcgttactcga
gagcgcattcgtcagattgaagcaaaggcgattcgtaagttaaaacatcctagtcgttcg
aagaaattaaggagttttttagatggttag
DBGET
integrated database retrieval system
