Lysobacter auxotrophicus: LA521A_03040
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Entry
LA521A_03040 CDS
T09075
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
laux
Lysobacter auxotrophicus
Pathway
laux03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA521A_03040 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laux03021
]
LA521A_03040 (rho)
03019 Messenger RNA biogenesis [BR:
laux03019
]
LA521A_03040 (rho)
Transcription machinery [BR:
laux03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LA521A_03040 (rho)
Messenger RNA biogenesis [BR:
laux03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LA521A_03040 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA
Spore_III_AA
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDU15103
UniProt:
A0ABN6UHP4
LinkDB
All DBs
Position
complement(349246..350928)
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AA seq
560 aa
AA seq
DB search
MSDNTPDAGEVAEKRVRKARVSKAADNAPAAASADTSGAPAPSAPPAPRAEAPAPAADAS
ASSESRAEGASSAQGGEGGQHREGRDDANRGGNNRRDRFRNRRERQRERYRDQNGGMQDD
GGNGEQFVPRPHPQVPEGFPQYSLGDLKRMPTPKLLDVADQLQIQEGVARARKQDVIFAV
LKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDVYISPSQIRRFNLRTGDHLS
GRIRWPKDGERYFALAVVDTINGEPLEASKNKVLFENLTPLFPRKRFRLERGDGSTEDIT
GRILDLMAPQGKGQRALIVSPPKAGKTMMMQQVATAITSNHPDVHLIVLLVDERPEEVTE
MQRTVRGEVVSSTFDEPAGRHVQVAEMVIERAKRLVEHKKDVVILLDSITRLARAYNNVV
PSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT
GNSEVHLDRRIAEKRVYPAININRSGTRREDLLIEPELLQKIWILRKLLHGMDEIGAMEF
LLDKMKTTKSNDEFFSSMKR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataacacccctgacgccggcgaagtcgccgagaagcgcgtgcgcaaggcacgc
gtgagcaaggccgccgacaacgcgcctgccgccgcttccgccgacacctccggcgctccc
gccccgagcgcgccgcccgcgccgcgcgccgaagcgccggccccggccgccgatgcctcc
gcttcatccgaatcgcgcgccgaaggcgcctcgtccgcccagggcggcgaaggcggccag
caccgcgaaggccgcgacgacgccaaccgtggcggcaataaccgccgcgaccgcttccgc
aaccgtcgcgaacgccagcgcgagcgctaccgcgaccagaacggcggcatgcaggacgac
ggcggcaacggcgagcagttcgtgccgcgcccgcacccgcaggtgccggaaggcttcccg
cagtattcgctgggcgacctcaagcgcatgcccacgccgaaactgctggacgtggccgac
cagctgcagatccaggaaggcgtcgcccgcgcccgcaagcaggacgtcatcttcgccgtc
ctgaaggtgctcacccgccacggtgaaggcgtcgccgccgacggcgtgctggaaatcctg
ccggacggcttcggcttcctgcgcgccgccgaggccagctacctggccggcccggacgac
gtgtacatctcgcccagccagatccgccgcttcaacctgcgcaccggcgaccacctgtcc
ggccgcatccgctggccgaaggacggcgagcgctacttcgcgctggccgtggtcgacacg
atcaacggcgagccgctggaagcgtcgaagaacaaggtcctgttcgagaacctgaccccg
ctgttcccgcgcaagcgcttccgcctggagcgcggcgacggttcgaccgaagatatcacc
ggccgcatcctcgacctgatggcgccgcagggcaaaggccagcgcgcgctgatcgtctcg
ccgcccaaggcgggcaagacgatgatgatgcagcaggtggccacggccatcaccagcaat
catccggacgtgcacctgatcgtgctgctcgtcgacgaacgcccggaagaagtgaccgaa
atgcagcgcaccgtgcgcggcgaagtggtgtcgtcgaccttcgacgaacccgccggccgc
cacgtgcaggtcgccgagatggtgatcgagcgcgccaagcgcctggtcgagcacaagaag
gacgtcgtgatcctgctcgactcgatcacccgcctggcccgcgcgtacaacaacgtcgtg
ccgtcgtcgggcaaggtgctcaccggtggtgtcgacgccaacgcgctgcatcgtccgaag
cgtttcttcggcgcggcccgtaacgtcgaggaaggcggttcgctgaccatcatcgccacc
gcgctgatcgacaccggcagcaagatggacgaggtgatctacgaggagttcaagggcacc
ggcaactccgaagtgcacctggaccgtcgcatcgccgagaagcgcgtctacccggccatc
aacatcaaccgctccggcacgcgtcgcgaagacctgctgatcgagccggaactgctgcag
aagatctggatcctgcgcaaactcctgcacggcatggacgagatcggcgcgatggagttc
ctgctggacaagatgaagacgaccaagtcgaacgacgagttcttcagctcgatgaagcgc
tga
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