Lysobacter auxotrophicus: LA521A_09420
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Entry
LA521A_09420 CDS
T09075
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
laux
Lysobacter auxotrophicus
Pathway
laux03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LA521A_09420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laux03021
]
LA521A_09420 (rpoC)
03400 DNA repair and recombination proteins [BR:
laux03400
]
LA521A_09420 (rpoC)
Enzymes [BR:
laux01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LA521A_09420 (rpoC)
Transcription machinery [BR:
laux03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LA521A_09420 (rpoC)
DNA repair and recombination proteins [BR:
laux03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LA521A_09420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDU15741
UniProt:
A0ABM8DB01
LinkDB
All DBs
Position
1056559..1060785
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNLFNQQRAAIDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTALERGTLLTEEQFLQARQEHGDDFEASM
GAEAVYELLRTIDLQSEMVTLKEEIAATNSETKLKRLTKRIKLVEAFLESGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENKAGEGMAFANVAEVKRAYDNR
VVQLHAKCKVRITETVKNEDGTSEQKTSIVDTTVGRALLREILPEGLPFALANVELTKKN
ISRLINSCYRMLGLKDTVVFADKLMYTGFGYATRAGVSIGIDDMLIPVEKKGILDEAEAE
VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERVAKAMMDAIGTEKVQNAKGETIDQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTFEGLTMTPIVEGGDVVEPLRDRVL
GRVVAEDVFLPGNDEEPIVTRNTLLDEAWVQKLEDASVQSIKVRSTITCSSSFGVCSHCY
GRDLGRGHLVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGTIK
FNNLKHVEHASGNLVAVSRSGELSVLDGHGRERERYKLPYGATVNVKDGAEIKAGQTVAN
WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDELTGLASREITDPKRRGSQGKDLRPIVR
IVDKNGKDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAERSGIVSFGKDTKGKQRLIIKDTDGNEHEELIPKYRQIIVFE
GEHVEKGETVVDGEPSPQDILRLLGVEPLAVYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEITDQGDSKFLNGEQVERQRMIEENARLAARGEIVAGFEPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDSLRGLKENVIVGRLIPAGTGLAYHTQRRRGATGLTESE
LEALASPVTTAEPAAETADVQGEESSAS
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaacctcttcaaccagcagcgcgcggcgatcgacttcgacgccatc
aagatcgcgctggcctcgccggacctgatccgttcctggtcctacggcgaagtgaagaag
ccggaaaccatcaactaccgcaccttcaagcccgagcgcgacggcctgttctgcgccgcg
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgcgagaagtgcggcacggaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgccggtcgcgcacatctggttcctgaagtcgctc
ccgtcgcgcatcggcctgatgctcgacatgacgctgcgcgacatcgaacgcatcctgtac
ttcgaagcctacgtggtgacggagccgggcctgaccgcgctcgagcgcggcacgctgctc
accgaagagcagttcctgcaggcgcgccaggagcacggcgacgacttcgaagcgtcgatg
ggcgccgaggccgtctatgagctgctgcgcacgatcgacctgcagtcggaaatggtcacg
ctgaaggaagagatcgccgcgaccaacagcgaaaccaagctcaagcgcctcaccaagcgc
atcaagctggtcgaagccttcctcgaatccggcaaccgtccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgcttc
gcgacctccgatctcaacgacctgtaccgccgcgtcatcaaccgcaataaccgcctgcgc
cgcctgctcgaactcaacgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgacgcgctgatggacaacggccgtcgtggccgtgccatcaccggcaccaac
aagcgcccgctcaagtcgctcgccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctcggcaagcgcgtggactactcgggccgttcggtcatcgtggtcggtccgacc
ctgcgcctgcacgaatgcggcctgccgaagaagatggcgctggagctgttcaagcccttc
atcttcgccaagctgcagcgccgtggtctcgccacgaccatcaaggccgccaagaagctc
gtcgagcgcgaagaggccgaggtgtgggacatcctggaagaggtgatccgcgagcatccg
gtcctgctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgcgttcaacgcggac
ttcgacggcgaccagatggccgtgcacgtgccgctctcgctggaagcccagctcgaagcg
cgcgcgctgatgatggcgtcgaacaacatcctgtcgccggcgaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgccctggagaacaag
gcgggcgagggcatggcgttcgccaacgtcgccgaagtgaagcgcgcgtacgacaaccgc
gtcgtgcagctgcacgccaagtgcaaggtgcgcatcaccgagacggtgaagaacgaggac
ggcaccagcgagcagaagacctcgatcgtcgacacgaccgtgggtcgcgccctgctgcgt
gagatcctgcccgaaggcctgccgttcgcgctggccaatgtcgagctgaccaagaagaac
atcagccgcctgatcaactcgtgctaccgcatgctcggcctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcggctacgccacgcgtgccggtgtgtccatcggc
atcgacgacatgctgatcccggtcgagaagaagggcatcctggacgaggccgaagccgag
gtcctggaaatccaggagcagtaccagtcgggcctggtcaccgccggcgagcgctataac
aaggtcgtcgacatctggtcgcgcacgaacgagcgcgtggccaaggcgatgatggacgcg
atcggcaccgagaaggtgcagaacgcgaagggtgagaccatcgaccagaagtcgatgaac
tcgatctacatcatggccgactccggcgcgcgtggttcgcaggcgcagatccgtcagctg
gccggtatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggcctgaacgtcctccagtacttcatctcgacccacggcgcccgt
aagggtctggccgataccgcgctgaagacggcgaactcgggttacctgacccgtcgcctc
gtcgacgtcgcgcaggacgtggtgatcaccgagaccgattgcggcacgttcgaaggcctc
accatgaccccgatcgtcgaaggcggcgacgtggtcgagccgctgcgcgatcgcgtgctg
ggtcgcgtcgtggccgaggacgtgttcctgccgggcaacgacgaggaaccgatcgtcacg
cgtaacaccctgctcgacgaagcgtgggtgcagaagctcgaggacgccagcgtccagtcg
atcaaggtgcgttcgaccatcacctgctccagctcgttcggcgtgtgctcgcactgctac
ggtcgcgacctgggtcgcggtcacctggtgaaccacggcgaagcggtcggcgtcgtcgcc
gcgcagtcgatcggcgagccgggtacgcagctgacgatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggcggccatcgacaacgtgacggtcaagaccaccggtacgatcaag
ttcaacaacctcaagcacgtcgagcacgccagcggcaacctggtggcggtctcgcgttcg
ggcgaactgtcggtgctcgacggccacggccgcgagcgcgagcgctacaagctgccgtac
ggcgcgaccgtcaacgtgaaggatggcgcggagatcaaggcgggccagacggtcgccaac
tgggatccgcataaccacccgatcgtgtcggaagtggccggcttcgtgcgcttcatcgac
ttcgtcgacggcgtcaccgtcatcgagaagaccgacgaactgaccggcctggcctcgcgc
gagatcaccgatccgaagcgtcgcggctcgcagggcaaggacctgcgtccgatcgtccgc
atcgtcgacaagaacggcaaggacctgagcatcccgggtaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtgaacctgcaggacggcgcgccggtgggcgtgggtgac
gtggtcgccaagatcccgcaggaggcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcccgcaagccgaaggatccggcggtgctggccgagcgt
tcgggcatcgtgtcgttcggtaaggacacgaagggcaagcagcgcctgatcatcaaggac
accgacggaaacgagcacgaagagctcatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagaccgtggtggacggcgagccgagcccgcaggacatc
ctgcgtctgctgggtgtcgaaccgctggccgtgtacctgaccaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcgcaaggtcgagatcaccgaccagggcgacagcaagttcctcaatggcgagcaggtc
gagcgtcagcgcatgatcgaggagaacgcacgtctggccgcccgcggcgagatcgtggcc
ggcttcgagccggtgctgctcggcatcaccaaggcgtcgctggcgaccgagtcgttcatc
tcggcggcttccttccaggagaccacccgcgtgctgaccgaggccgccgtgcgcggtacc
cgcgacagcctgcgtggcctgaaggagaacgtgatcgtgggtcgtctgatcccggccggt
acgggtcttgcgtaccacacccagcgccgtcgcggcgccacgggcctgacggaatcggag
ctggaggcgctcgcgtccccggtgacgaccgccgagcccgcggccgaaaccgccgacgtc
cagggcgaagagtccagcgcgtcgtaa
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integrated database retrieval system
