Lysobacter auxotrophicus: LA521A_13320
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Entry
LA521A_13320 CDS
T09075
Symbol
rimO
Name
(GenBank) 30S ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
laux
Lysobacter auxotrophicus
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
laux03009
]
LA521A_13320 (rimO)
Enzymes [BR:
laux01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
LA521A_13320 (rimO)
Ribosome biogenesis [BR:
laux03009
]
Prokaryotic type
ribosomal protein modification factors
LA521A_13320 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
YajR_YAM
TRAM
CLP1_P
Motif
Other DBs
NCBI-ProteinID:
BDU16131
LinkDB
All DBs
Position
1499934..1501265
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AA seq
443 aa
AA seq
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MSLANPKVGFVSLGCPKALVDSERILTQLRVEGYDIVQTYDDADVVVVNTCGFIDSAVTE
SLDAIGEAIAENGKVIVTGCLGKKPEQIREAHPGVLSISGPQDYGSVMTAVHAALPPKHD
PFLDLVPDTGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVDQVLREAEKLAM
GGVKELLVISQDTSAYGVDVKYAEREWRGKSYQTRMKALCEGLGELGIWTRLHYVYPYPH
VDDIIPLMADGKLLPYLDIPFQHASPRVLKLMKRPGAVDKTLERIQRWRTIAPDIAIRST
FIVGFPGETEAEFEELLDFLDEAQLDRVGAFAYSPVEGATANALPDSIPEEVKQERLARF
MEKQAGISAMKLEAKVGTRQRCLVDAVDGELAIARTMYDAPEIDGLVQIQNGFMAGVKPG
EFVDVEIMGSDEHDLFGEVPFED
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttgccaatcccaaagtcggtttcgtcagcctcggttgcccgaaggcgctcgtc
gattccgaacgcatcctcacccagttgcgcgtggaggggtacgacatcgtgcagacctac
gacgacgccgacgtcgtcgtggtcaacacctgcggcttcatcgactcggcggtgaccgaa
tcgctggacgccattggcgaggccatcgcggagaacggcaaggtcatcgtcaccggctgc
ctgggcaagaagcccgagcagatccgcgaagcccatccgggcgtgctgtccatcagcgga
ccgcaggactacggcagcgtgatgaccgccgtgcatgcggcgcttccgcccaagcacgat
ccgttcctggacctcgtcccggacaccggcatcaagctcacgcccaagcactacgcgtac
ctcaagatttccgaaggctgcaatcaccgctgcagcttctgcatcatcccgtcgatgcgc
ggcgacctggtcagccgtccggtcgaccaggtgctgcgcgaagccgagaagctcgcgatg
ggcggcgtgaaggagctgctggtcatctcgcaggacacctccgcctacggcgtcgacgtg
aagtacgccgagcgcgaatggcgcggcaagtcgtaccagacgcgcatgaaggcgttgtgc
gaaggactgggcgagctgggcatctggacgcgcctgcactacgtgtacccgtacccgcac
gtggacgacatcatcccgctgatggcggacggaaagctgctgccgtacctggacatcccg
ttccagcacgccagcccgcgcgtgctcaagctgatgaagcgtccgggcgcggtcgacaag
acgctcgaacgcatccagcgctggcgcaccatcgcgcccgacatcgccatccgctccacc
ttcatcgtcggtttcccgggcgagacggaagccgagttcgaggaactactggatttcctc
gatgaagcgcagctcgaccgcgttggcgcgttcgcctattcgccggtggaaggcgccacc
gcgaacgcactgccggattcgatcccggaagaagtgaagcaggagcgcctggcgcgcttc
atggagaagcaggccgggatttccgcgatgaagctggaagccaaggtcggcacgaggcag
cgctgcctcgtcgatgcggtcgacggcgaactcgccatcgcgcgcacgatgtacgacgcg
ccggaaatcgacggcctcgtgcagatccagaacggcttcatggccggcgtgaagccgggc
gaattcgtcgacgtggagatcatgggcagcgacgaacacgacctgttcggcgaagtgccg
ttcgaggattga
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