KEGG   Lysobacter auxotrophicus: LA521A_15090
Entry
LA521A_15090      CDS       T09075                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
laux  Lysobacter auxotrophicus
Brite
KEGG Orthology (KO) [BR:laux00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:laux03400]
    LA521A_15090
Enzymes [BR:laux01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LA521A_15090
    5.6.2.6  RNA 3'-5' helicase
     LA521A_15090
DNA repair and recombination proteins [BR:laux03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    LA521A_15090
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 PhoH
Other DBs
NCBI-ProteinID: BDU16308
LinkDB
Position
1710754..1715304
AA seq 1516 aa
MPLSAFHPAVAAWFAKAFPAPTSAQVQAWPAIRSGRNTLVAAPTGSGKTLTAFMTAIDML
VRRGLEHANNGSLFEEAAALPDETFVVYISPLKALSNDIRINLEAPLAGIREELAAMGLP
DVEIRTAVRTGDTPQAERAANRRKPPHILVTTPESLYVLLGSESGRAMLSTVRSVIVDEI
HAVAASKRGSHLSLSLERLEALCGHRLTRVGLSATQKPIEQVARFLVGSAAVAPDGTPDC
EIVDIGYTRERDLALELPPTPLSAVMSSDQWEQVYTRVCELVEQHRTTLVFVNTRRMAER
AAHHLGEKLGKDAVAAHHGSLSKELRLDAEQRLKRGELRVLVATASLELGIDIGDVDLVC
QLGSPRSIAAFLQRVGRSGHYVGGTPKGRLFPQTRDELVECAALLDGVRRGELDALIMPE
APLDVLAQQIVAEAACQEWSEDALFDWVRRAWPYAQLKREDFNAIVRMLADGFTTRRGIR
AGYLHRDAVNRVVRGRKGGRTTALMSGGTIPDTGDYSVIMEPESVFIGTVNEDFAIESMA
GDIFQLGNASYRILRVEPGKVRVEDAQGQPPSIPFWLGEAPGRTDELSVAVSRLREEVTA
RLAVEPLSPRERGWGEGRDGQGNDAADAALATAPDALQTNIESTSAFRHLTEEVLLTPEA
ARQIIEYLGSAAATLGAMPTQHTLVLERFFDESGGTQLIIHTPYGSRINRAWGLALRKRF
CRKFNFELQAAATEDAIILSLSTSHSFPLIEVASYLHSASAEHVLVQALLDAPLFGARWR
WVATTALALPRFVGGKKVPPQLQRMKSEDLLATVFPDQVACAENLVGEREVPDHPLVAQT
LHDCLHEAMDIDGWLDVLRAMEAGEVQVVARDLSAPSPFAAEILNARPYAFLDDAPLEER
RTQAVQTRRYTDARSADDLGRLDADAIDAVREECWPQVRNADEMHEALMGLGVVSEREVR
ENGWADWLQRLVRAHRATKLMPPPIDKPVGQRGSDGNGLWVAAERLPQLQAVYVDVPMQA
PIQAPAEYAAQAWDREDALVELLRSRLTGLGPTPSSVIADDLSLPRSDVDLALLRLQNEG
YVMQGRFTPGIGVDEWCERHLLARIHRYTLKRLRREIEPVAPRDFMRFLFDWQRVAPSTR
VNGPEALAGVVSQLEGFEAPAAAWESELLPARINDYSISWLDDLCTAGRTLWTRLRAGPA
DTGAAKGSTPVRATPIVLLPRRDAAAWTRLAPPPAADEALSSRAQKVVDYLGEHGASFFD
ELVGGAHLLRTELEDALAELVARGRVHCDSYAGLRALLVPASKRPSATNPGRRRRIAMNG
IEDAGRWALIRRNASAEQARTPEDVEHVARTLLRRYGVVCWRLLEREAQWLPPWRELVRV
YHRLEARGEIRGGRFIAGLSGEQFALPEAIGLMRQIRQRQHDGAMVCVSAVDPLNLVGTI
VSGEKVPRLAGSRILYRDGVPVGTLVSGEVNLLAELPHDEEAKVRRLLLREPERSIAGFT
APISLTSLAPVVRTTH
NT seq 4551 nt   +upstreamnt  +downstreamnt
atgcccctgagcgcctttcatcccgccgtcgccgcctggttcgccaaggcgttccccgcg
cccacgtccgcgcaggtccaggcgtggccggcgatccgcagcggccgcaacacgctggtc
gccgcgcccaccggttcgggcaagacgctcaccgcgttcatgaccgccatcgacatgctc
gtccgccgtggactggagcatgcgaacaacgggagcctgttcgaggaagccgcggcgctg
ccggacgaaaccttcgtcgtctacatctcgccgctgaaggcgctgtccaacgacatccgc
atcaacctcgaggccccgctcgccggcatccgcgaggaactggccgcgatgggcctgccg
gatgtcgagatccgcaccgccgtgcgcaccggcgacacgccgcaggccgagcgtgccgcg
aaccgccgcaagccgccgcacatcctcgtcaccacgcccgaatcgctgtacgtgctgctg
ggttccgaatccggccgcgcgatgttgtcgaccgtgcgttcggtgatcgtcgacgaaatc
cacgccgtcgccgcgagcaaacgcggcagccatctctcgctctcgctcgaacgcctggaa
gccttgtgcggccatcgcctcacgcgcgtgggcttgtccgccacgcagaagccgatcgag
caggtcgcacgattcctcgtcggttccgccgccgtcgcgccggacggcacgcccgattgc
gagatcgtcgacatcggctacacgcgcgaacgcgacctcgcgctcgaattgccgccgacg
ccgctgagcgcggtgatgtcgtccgaccagtgggagcaggtgtacacgcgcgtctgcgag
ctggtcgaacagcaccgcaccacgctcgtgttcgtcaacacgcgccgcatggccgagcgc
gccgcgcaccacctgggcgaaaaactcggcaaggacgcggtggccgcgcatcacggttcg
ctgtcgaaagagctgcgcctggatgccgaacaacgcctcaagcgcggcgaactgcgcgtg
ctggtggcgaccgcctcgctggaactgggcatcgacatcggcgacgtggacctggtgtgc
cagctcggttcgccgcgttcgatcgcggcgttcctgcagcgcgtgggtcggtccggacac
tacgtgggcggcacgccgaaggggcgcctgttcccgcagacgcgcgacgaactggtcgag
tgcgcggcgctgctcgacggcgtgcgtcgcggcgaactggatgcattgatcatgcccgag
gcgccgctggacgtgctcgcgcagcagatcgtcgccgaagccgcgtgccaggagtggagc
gaggacgcgctgttcgactgggtgcgtcgcgcgtggccgtacgcgcagctcaagcgcgag
gatttcaacgcgatcgtgcgcatgttggccgatggcttcaccacgcggcgcggcatccgc
gcgggctacctgcatcgcgacgccgtgaaccgcgtcgtgcgcggccgcaagggcggacgc
accaccgcgctcatgtccggcggcaccattcccgataccggcgattactcggtgatcatg
gaacccgagtcggtgttcatcggcacggtaaacgaggatttcgccatcgaaagcatggcc
ggcgacatcttccagctgggcaatgcgagctaccgcatcctgcgcgtggagcccggcaag
gtgcgcgtggaagacgcgcagggccagccgccgagcatcccgttctggctgggcgaagcg
ccgggtcgtacggatgaactgtccgtcgccgtgtcgcggttgcgcgaggaagtcaccgcg
cgcctcgctgttgagcccctctccccccgcgagagggggtggggtgagggtcgggacgga
cagggcaatgatgcggccgatgctgctcttgcaaccgcgcccgacgctctgcaaaccaac
atcgaatccaccagcgccttccgccatctcaccgaagaagtcctgctcacgcccgaagcc
gcgcgccagatcatcgaatacctcggcagcgcggccgccacgctgggtgcgatgccgacg
cagcacacgctggtgctggagcgcttcttcgacgaatccggcggcacgcagctcatcatc
cacacgccttacggcagccgcatcaaccgcgcgtggggcctggccctgcgcaagcgcttc
tgccgcaagttcaatttcgaactgcaggcggcggcgaccgaagacgcgatcatcctgtcg
ctgtccaccagccacagcttcccgctgatcgaagtcgccagctacctgcattcggcatcc
gccgaacacgtgctggtccaggcgctgctcgacgcgccgctgttcggcgcgcgctggcgc
tgggtcgcgaccaccgcgctcgcgctgccgcgcttcgtcggcggcaagaaggtgccgccg
cagttgcagcgcatgaagtccgaggacctgctcgcgacggttttccccgatcaggtcgcg
tgcgcggaaaacctcgtcggcgagcgcgaggtgcccgaccatccgctggtcgcgcagacc
ttgcacgactgcctgcacgaggcgatggacatcgacggctggctcgacgtgctgcgcgcg
atggaagcgggcgaagtgcaggtcgtcgcgcgggacttgagtgcgccgtcgccgttcgcc
gcggaaatcctcaacgcgcgtccctacgccttcctcgacgacgcgccgctggaagagcgc
cgcacgcaggctgtgcagacgcgccgctacacggacgcgcgcagcgcggacgatctcggc
cgcctcgacgccgacgccatcgacgccgtgcgcgaggaatgctggccgcaggtccgcaac
gccgacgagatgcacgaggcgctgatgggcctgggcgtcgtcagcgagcgcgaagtgcgc
gaaaacggctgggccgactggctgcagcgcctggtccgcgcgcatcgcgcgacgaaactc
atgccgccgccgatcgacaagcccgtgggccaacgcggcagcgatggcaatggcctgtgg
gtcgcagccgaacgcctgccgcagttgcaggcggtctacgtcgacgtgccgatgcaggcg
ccgatccaggcgcccgccgaatacgccgcgcaagcctgggatcgcgaggacgcgctggtc
gaactgctgcgctcgcgcctgaccggtcttgggccgacgccgtcgtcggtcatcgcggac
gatctgtcgttgccgcgcagcgacgtggacctcgcactgctgcgcctccagaacgaaggc
tacgtgatgcagggccgcttcacgcccggcatcggcgtggacgaatggtgcgagcgccat
ctgctcgcgcgcatccaccgatacacgctcaagcgcctgcgtcgcgagatcgaaccggtc
gcgccgcgcgatttcatgcgtttcctgttcgactggcagcgcgtcgcgccgagcacgcgc
gtcaacgggcccgaggcgctcgccggcgtcgtgtcgcagctggaaggcttcgaagcgccc
gcggccgcatgggaaagcgaactgctgccggcgcgcatcaacgactattccatctcgtgg
ctcgacgacctgtgcaccgccggccgcacgctgtggacgcgcctgcgcgcgggcccggcc
gatacgggtgcggcgaagggcagtacgccggtgcgcgccacgcccatcgtgctgttgccg
cgtcgcgatgccgcggcgtggacgcgactcgcgccaccgccggcggccgatgaggcgctg
tcgtcgcgcgcgcagaaagtcgtggattacctcggcgaacacggcgcgtcgttcttcgac
gaactcgtcggtggcgcgcatctgctccgcaccgaactggaggacgcgctggccgaactc
gtcgcgcgtggccgcgtgcattgcgacagctacgccggtcttcgcgcgttgctcgtgccc
gcgtccaagcgtccgagcgcgaccaacccgggccgtcgtcgtcgcattgcgatgaacggc
atcgaggacgccggccgttgggcgttgatccggcgcaatgcgtcggccgaacaggcgcgc
acgccggaagacgtcgaacacgtcgcgcgcacgctgctgcgccgatatggcgtggtgtgc
tggcgcctgcttgaacgcgaggcgcaatggttgccgccgtggcgcgaactcgtccgtgtc
taccatcgcctcgaagcgcgtggcgaaatccgcggcggtcgcttcatcgccggtctttcg
ggcgagcagttcgcgttgccggaggccatcggcctgatgcgccagatccgccagcgtcaa
cacgatggcgcgatggtgtgcgtgtcggcggtcgatccgctcaacctggtgggcaccatc
gtcagcggcgagaaggtgccgcgcctggccggctcgcgcatcctctatcgggatggcgtg
ccggtgggaacgctcgtgtccggcgaggtgaacctgctggcggaactgccgcacgacgag
gaagcgaaggtccgccgcctcctgctgcgcgaaccggaacgttcgatcgcgggattcacc
gcgcccatctcgttgacgtcgctggcgccggtggtgcgcacgacacactga

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