Lysobacter auxotrophicus: LA521A_22430
Help
Entry
LA521A_22430 CDS
T09075
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laux
Lysobacter auxotrophicus
Pathway
laux03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LA521A_22430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laux03400
]
LA521A_22430 (ligD)
Enzymes [BR:
laux01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LA521A_22430 (ligD)
DNA repair and recombination proteins [BR:
laux03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LA521A_22430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
BDU17042
LinkDB
All DBs
Position
2519219..2521804
Genome browser
AA seq
861 aa
AA seq
DB search
MSLTEYRRKRQFNKTREPEPGKRLPQGQRAIFVVQLHHASRRHYDFRLQIGDALKSWAVP
KGPSYDPNVKRMAVEVEDHPVDYAQFEGEIPKGHYGGGHVAQFDHGVWATQYDPEEQLAK
GHLRFELFGDKLKGGWHLVRSGKPARQPQWLLFKDKDEYAGTLEADDLLADVTPPPDEDA
KRAGRGKARRKRETEVPVRSATRHRDWAKLAMKLTGARKAAAPTEFFAPQLAKLGDAPPD
GDQWLHEIKWDGYRIVATVAKGKAKLWSRNALDWTDKVPEITGAIEALGLKSAALDGELI
AGNGTRDDFNLLQATLSGERQGLLSYALFDLLHIDGVDISKAPLIERKALLEQVLGEGTR
HLSYSSHAVGDGEQAFELAGQQDFEGIISKRADRAYHSGRGDDWRKTKALHSDEYAVVGW
TAPKGSRSGFGSLLLATPDKRHGWAYVGRVGSGFSDTLIKDISKRLGRGGSKEPTVYVPE
NDTDLRSAKWFEPRFVVEVNFRGIGGQGLLRQPSLKAVRDDKRIEDLGDSDRGPRGSAAK
GASKSAASKSAATKKTAKKATKASAKTPATPARTPPKLSSPTKVLYPDDGYTKLDVANYY
AAVRDHLLPEIAGRPLSIIRCPAGTDKPCFFQKHHTPGLELVEFVRLKEEAGNNANYLVV
NDEAALMELVQFNALEFHPWGAHADDPDRADRIVFDLDPGPDVPFAEVKRAALDVRKRLI
ELELESFLRTTGGKGLHVVVPLNPGCDWSLVKPFAQSFAEVMSQAEPDRFLSVSTKRLRN
KRIFVDYLRNGRGATAVASYSLRARPRAPVSMPLAWSELSKLKRGDAFTIADVPARLKRR
RKDPWAGIEKVKQNLSKFSAD
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgacggaataccgccgcaagcgtcagttcaacaagacccgcgaacccgagccc
ggcaagcgcctgccgcagggccaacgggccatcttcgtcgtccagctgcaccacgcgagc
cggcggcattacgacttccgcctgcagatcggcgacgcgctgaaaagctgggccgtgccg
aagggcccgagctacgacccgaacgtgaagcgcatggccgtcgaggtcgaagaccatccg
gtcgattacgcgcaattcgaaggcgagatcccgaaaggccattacggcggcgggcatgtg
gcgcagttcgatcacggcgtgtgggcgacgcaatacgatccggaggaacagctcgccaag
gggcacctgcgcttcgagctgttcggcgacaagctcaagggcggctggcacctggtgcgc
tcgggcaagccggcgcgccagccgcagtggctgctgttcaaggacaaggacgaatacgcc
ggaacgctggaagccgacgacctgctcgccgacgtcaccccgccgccggacgaagacgcc
aagcgcgccggacgcggaaaggccaggcgcaagcgcgaaaccgaagtgcccgtgcgcagc
gccacgcgccatcgcgactgggcgaaactcgcgatgaaactcaccggcgcgcgcaaagcc
gccgcgccgacggagttcttcgcgccgcagctggccaagctcggcgacgcaccgccggac
ggcgaccagtggctgcacgagatcaagtgggacggctaccgcatcgtcgccaccgtcgcg
aagggcaaggcgaagctgtggtcgcgcaacgcactggactggaccgacaaggtgccggaa
atcaccggcgcgatcgaagcgctgggcctcaaatccgccgcgctcgacggcgagctcatc
gccggcaacggcacgcgcgacgacttcaacctgttgcaggccacgctgtcgggcgagcgc
cagggcctgctttcgtacgcgttgttcgacctgctgcacatcgacggcgtggacatcagc
aaggcgccgctgatcgaacgcaaggcgctgctggagcaggtgctcggcgaaggcacgcgc
cacctgtcgtacagctcgcacgcggtgggcgacggtgagcaggcgttcgaactcgccggg
cagcaggatttcgaaggcatcatttccaagcgcgcggatcgcgcctaccactccgggcgc
ggcgacgactggcgcaagaccaaggcgctgcacagcgacgaatacgcggtcgtcggctgg
acggcgccgaaaggcagccgcagcgggttcggctcgctgctgctcgccacgcccgacaag
cgccacggctgggcctacgtgggccgcgtcggcagcgggttttcggacacgctgatcaag
gacatcagcaagcggctcggacgcggcggatcgaaggaaccgaccgtgtacgtgcccgag
aacgacaccgacctgcgcagcgcgaagtggttcgaaccgcgcttcgtggtcgaggtgaac
ttccgcggcatcggcgggcaggggctactccggcagccgtcgctgaaggccgtgcgcgac
gacaagcgcatcgaggacctgggcgacagcgatcgcggtccgcgcggttcggctgcgaaa
ggcgcatcgaagtccgccgcatcgaagtccgcggcgacgaagaagaccgcgaagaaggca
acgaaagcctcggcgaaaactccggcgacacccgcgcgcacgccgcccaagctcagcagc
ccgacgaaggtgctgtatcccgacgacggctacaccaagctcgacgtcgccaactactac
gccgcggtgcgagaccacctgctgccggaaatcgccgggcgcccgctgtcgatcatccgc
tgcccggcgggtacggacaaaccgtgtttcttccagaagcaccacacgccgggactggaa
ctggtcgagttcgtccgcctgaaggaagaagcgggcaacaacgccaactacctggtggtg
aacgacgaagccgcgctgatggaactggtgcagttcaacgcgctggaattccatccgtgg
ggcgcgcacgcggacgatcccgatcgcgccgaccgcatcgtcttcgacctcgacccaggc
cccgacgtcccgttcgccgaggtgaaacgcgcggcgctcgacgtgcgcaagcgcctgatc
gaactggaactggaatccttcctgcgcaccaccggcggcaagggcctgcacgtggtggtg
ccgctgaatccgggctgcgactggagcctggtgaagccgttcgcgcagagcttcgcggag
gtgatgtcgcaggccgagcccgatcggttcctgtcggtgtcgaccaagcgcctgcgcaac
aagcgcatcttcgtcgactacctgcgcaacgggcgcggcgcgacggcggtggcgtcgtat
tcgctgcgcgcacgcccgcgcgcgcccgtgtcgatgccgctggcgtggagcgagctgtcg
aaactcaagcgcggcgacgcgttcaccatcgccgacgtccccgcgcgcctgaagcgtcgc
cgcaaggacccatgggcgggcatcgagaaggtaaaacagaacctgtcgaagttctcggcg
gattga
DBGET
integrated database retrieval system
