Lysobacter auxotrophicus: LA521A_23830
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Entry
LA521A_23830 CDS
T09075
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
laux
Lysobacter auxotrophicus
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
laux03016
]
LA521A_23830 (rnd)
Enzymes [BR:
laux01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LA521A_23830 (rnd)
Transfer RNA biogenesis [BR:
laux03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LA521A_23830 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Rav1p_C
Motif
Other DBs
NCBI-ProteinID:
BDU17182
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All DBs
Position
2678729..2679829
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AA seq
366 aa
AA seq
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MPVAWITDPAQLRARFASPPARIGLDTEFIRERTYWPQLALVQIAIGDAQGEPDILLVDP
LVPGMLDALTPILADESIVKVMHSPSEDLVAFKHACNVVPKPLFDTQLAAALAGVGGGLG
YQKLVEQLTGVVLPKGETRSDWLRRPLSPSQLEYAADDVRHLFEMHDQLDRKLGELDRRE
WLAEDAARIVQNAENEAPERWPHASMRSAQFLDRDAQLRLLRLLRWRDVYARDNDRPRSW
ILDNELAVTLARTPPIDHAGLQRTLDAVPKSPRRLSDAIWAALNTPLPDENDAPDAVQSE
QRDKQRLRKLQDAVAARSAELGLPDGVLASRRWLEVLMDQGEWPDALAGWRRRALEPRLA
PLLQAS
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcgcctggatcaccgaccccgcgcagttgcgggcccgcttcgcgtcaccgccc
gcgcgcatcggcctggataccgaattcatccgcgaacgcacgtactggccgcagctggcg
ctggtgcagatcgcgatcggcgatgcgcagggcgagccggacatcctgctggtcgacccg
ctcgttccgggcatgctcgacgcattgacgccgatccttgccgacgaatccatcgtcaag
gtcatgcacagcccgagcgaggacctggtcgcattcaagcatgcgtgcaacgtcgtgccc
aagccgctgttcgacacgcagctcgcggcggccctggccggcgtcggcggcgggctcggc
taccagaagctggtcgaacagctcaccggcgtcgtcctgccgaagggcgagacgcgctcg
gactggctgcgccgcccgctctcgccgtcgcagctggaatatgcggccgacgacgtgcgc
cacctgttcgagatgcacgaccagctggaccgcaagctgggcgaactcgatcgccgtgaa
tggctcgccgaagacgccgcgcgcatcgtgcagaacgccgaaaacgaagcgccggaacgc
tggccgcacgcgtcgatgcgcagcgcgcagttcctcgatcgcgacgcgcaacttcgcctg
ctgcgactgctgcgctggcgcgacgtgtacgcgcgcgacaacgatcgcccgcgcagctgg
atcctcgacaacgaactggccgtcacgctcgcgcgcacgccgccgatcgaccacgccggc
ctgcagcgcacgctggatgcggtcccgaagtcgccgcgccgcctgagcgatgcgatctgg
gccgcgctgaacaccccgctgccggacgaaaacgacgcgcccgacgccgtgcaatccgaa
cagcgcgacaagcagcgccttcgcaaactgcaggacgcggtggccgcgcgcagcgccgaa
ctcggcctgcccgatggcgtgctcgcctcgcgccgctggctcgaagtgctgatggaccag
ggcgaatggcccgacgccctcgccggctggcgccgccgggcgctggagcccaggctggca
ccgctgctgcaggcgtcctga
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