Lysobacter auxotrophicus: LA521A_24190
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Entry
LA521A_24190 CDS
T09075
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
laux
Lysobacter auxotrophicus
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
laux03009
]
LA521A_24190 (rlmD)
Enzymes [BR:
laux01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LA521A_24190 (rlmD)
Ribosome biogenesis [BR:
laux03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LA521A_24190 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
RrnaAD
MTS
Methyltr_RsmB-F
PCMT
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_ANTKMT
Methyltransf_15
Methyltransf_23
Methyltransf_37
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
BDU17218
UniProt:
A0ABM8DF27
LinkDB
All DBs
Position
complement(2722890..2724170)
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AA seq
426 aa
AA seq
DB search
MARRPDGKAVFVAGALPGERVMASQTGRHRSFDEARTVEVLDAAPERVAPRCAHFGVCSG
CAMQHYDEARQILAKQRVLMENFERIGHVEPERILPPLVDTSWGYRRKGRFSVRRVEKKD
KTLVGFRETDPRFVADIRECHTVMPQIASKLPELAALIDGMQARREIPQIEFIAGDAQDG
SHGDAFSGVALTIRHLVPLTDSDRDALVAFGKAHGFAIYLQPGGLDTVHAIWPESPKLAF
SLPQWNLEFLFRPLDFIQVNAGLNGKMIQLALDLLDPKPEDRVLDLFAGLGNFTLPLARQ
VREVVGVEGEAGLVRRARENAAHNGIANAEFHAADLAKDLSNEHWMKQPFDKLLLDPPRS
GADVVLAQLPLKQFDRIVYVSCHPASLARDAGFLVKERGWKLKAAGVMDMFPHTAHVESI
ALFEKA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgccgccccgacggcaaggccgtgttcgtcgccggcgcactgccgggcgaacgc
gtcatggcctcccagaccggtcgccaccgcagtttcgacgaagccaggaccgtcgaagtc
ctggacgccgcgcccgaacgcgtcgcgccgcgctgcgcgcacttcggcgtgtgcagcggc
tgcgccatgcagcattacgacgaagcccgccagatcctcgccaagcagcgcgtgctgatg
gagaacttcgagcgcatcggacacgtcgagcccgaacgcatcctgccgccgctggtcgac
acctcgtggggctatcgccgcaagggccgcttctcggtgcgccgcgtcgagaagaaggac
aagacgctggtcggtttccgcgaaaccgatccgcggttcgtcgccgacatccgcgaatgc
cacaccgtgatgccgcagatcgcctcgaagctgcccgaactggcggcactcatcgacggc
atgcaggcgcgtcgcgagatcccgcagatcgagttcatcgccggcgacgcgcaggacgga
tcgcatggcgatgccttcagcggcgtcgcgctgacgatccgccatctggtgccgctcacc
gacagcgatcgcgatgcgctggtcgcgttcggcaaggcgcacggtttcgccatctacctg
caacccggcggcctcgacaccgtgcacgccatctggccggaatcgccgaagctcgcgttc
tcgctgccgcagtggaacctcgaattcctgttccgtccgctggacttcatccaggtcaac
gcgggcctcaacggcaagatgatccagctcgcgctcgatctgctcgatccgaagcccgaa
gaccgcgtgctcgacctgttcgccggcctgggcaatttcaccctgccgctggcgcgccag
gtgcgcgaggtcgtgggcgtggaaggcgaggcgggcctggtccgtcgcgcacgcgagaac
gccgcgcacaatggcatcgccaatgccgagttccatgcggccgatctcgcgaaggacctg
tcgaacgagcactggatgaagcagccgttcgacaagctgctgctcgacccgccgcgctcc
ggcgccgacgtcgtgctcgcgcagctgccgctgaaacagttcgaccgtatcgtctacgtc
agctgccatccggcgtcgctggcgcgcgatgcgggcttcctggtgaaggagcgcggctgg
aagctcaaggccgccggcgtgatggacatgttcccgcacacggcgcacgtggaatcgatc
gcgttgttcgagaaagcgtga
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