Lysobacter auxotrophicus: LA521A_34320
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Entry
LA521A_34320 CDS
T09075
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
laux
Lysobacter auxotrophicus
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
laux03016
]
LA521A_34320
Enzymes [BR:
laux01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LA521A_34320
Transfer RNA biogenesis [BR:
laux03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LA521A_34320
Prokaryotic type
tRNA splicing ligases
LA521A_34320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDU18231
UniProt:
A0ABM8DHW4
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All DBs
Position
3827365..3828591
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AA seq
408 aa
AA seq
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MNTQHTSFDLLHAEGATTPIKGWTHGVPVEDQARQQLRNITTLPFVGPWVAVMPDVHLGI
GATVGSVVPTKGAIIPAAVGVDIGCGMAAVRTTLRADDLPDDLALLRNSIERSVPVGNGP
GGEHRRIPDSVETALEKSNLVARLAKIREKHPKIRPDKLDRQIGTLGGGNHFIEICLDEE
DRVWAMLHSGSRGTGNLIGTYFIELARRQLEKRVLGFHLPDRDLAFFLEGEPLFDEYVEA
VSWAQDYARANREAMMVRVLHEMRQRLPKFQTEKSAVNCHHNYVQREDHFGESLLVTRKG
AVSAREGELGIIPGSMGARSFIVRGKGNADSFHSCSHGAGRVMSRTAARARITLKEHREA
TAHVECRKDAGVIDESPAAYKDIDAVMAAQRDLVEIVHTLRQVVCIKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgcaacacacttcgttcgacctgctgcacgcggaaggtgcgaccacgccgatc
aagggctggacgcacggcgtgccggtcgaggaccaggcgcggcagcagctgcgcaacatc
accaccctgcccttcgtcgggccgtgggtcgcggtgatgcccgacgtgcacctgggcatc
ggcgcgacggtgggctcggtcgtgcccacgaagggcgcgatcatcccggccgcggtcggc
gtcgacatcggctgcggcatggccgcggtgcgcaccacgttgcgcgccgacgacctgccc
gacgacctcgcgctgctgcgcaattccatcgagcgcagcgtcccggtcggcaacggcccg
ggcggcgagcaccgccggattcccgacagcgtcgagacggcgctggagaagtccaacctc
gtcgcgcggctggcgaagatccgcgagaagcacccgaagatccgtccggacaagctcgac
cggcagatcggcacgctcggcggcggcaaccacttcatcgagatctgcctggacgaggaa
gaccgcgtgtgggcgatgctgcactccggttcgcgcggcaccggcaacctcatcggcacg
tacttcatcgagctggcgcgtcgccagctggagaagcgcgtgctcggcttccacttgccc
gatcgcgacctggcgttcttcctcgaaggcgagccgctgttcgacgagtacgtcgaagcg
gtctcgtgggcgcaggattacgcgcgtgcgaaccgcgaggcgatgatggttcgcgtgctg
cacgagatgcgccaacgcttgccgaagttccagacggagaagtcggcggtgaactgccac
cacaactacgtgcagcgcgaggaccacttcggcgagtcgttgctggtcacgcgcaagggt
gcggtcagcgcgcgcgagggcgagctcggcatcattccgggcagcatgggcgcacgcagc
ttcatcgtgcgcggcaagggcaacgcggacagcttccacagctgcagccacggcgccggc
cgcgtgatgagccgtaccgccgcacgtgcgcgcatcacgttgaaggaacaccgcgaggcg
accgcgcatgtcgaatgccggaaggacgccggagtgatcgacgaatcgcccgccgcgtac
aaggacatcgacgcggtgatggcggcgcagcgcgatctggtggagatcgtgcatacgctg
cggcaggtggtgtgtatcaagggatga
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