Loxodonta africana (African savanna elephant): 100653677
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Entry
100653677 CDS
T04351
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav01524
Platinum drug resistance
lav03430
Mismatch repair
lav05200
Pathways in cancer
lav05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
100653677 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100653677 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
100653677 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
100653677 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lav03400
]
100653677 (MSH2)
DNA repair and recombination proteins [BR:
lav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
100653677 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
100653677
NCBI-ProteinID:
XP_023413028
LinkDB
All DBs
Position
Unknown
AA seq
871 aa
AA seq
DB search
MFFFPPLGAKTLESVVLSKMNFESFVKGLLLVRQYRVEVYKNKAGNKASKENDWYLAFKA
SPGNLSQFEDILFGNNDMSSSIGVVGIKISVVDGQRQVGVGYVDSIQRKLGLCEFPDNDQ
FSNLEALLVQIGPKECVLPGGETTGDMGKLRQIILRGGILITDRKRAEFSAKDIYQDLNR
LLKAKKGEQMNSAVLPEMENQVAVASLSAVIKFLELLSDDSNFGQFELTTFDFNQYMKLD
IAAVRALNLFQGSLEDTTGSQSLAGLLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLV
EAFVEDAELRQILQEDLLRRFPDLNRLAKKFQRQAANLQNCYQVYQGVNQLPNVIQALEK
YEGKHQSLLLAIFVTPLVDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLTELRE
VMDDLEKKMQSTLTGAARDLGLEPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFTIVD
IQKNGVKFANSKLTSLNEEYTKNKTEYEEAQNAIVKEIINISSGYVEPMQTLNDVLAQLD
AVVSFAHVSNGAPVAYVRPVILEKGRGRILLTASRHACVEVQDEVAFIPNDVHFEKDKQM
FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVS
TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATRIGAFCMFATH
FHELTALADQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELASFPRHVIEC
AKQKALELEEFQNIGKSQDYGETEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTTMSEGD
ITMKLKQLKAEVIAKNNGFVNEIISRIKVTT
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgtttttttttccccctttaggagcaaagactctggagagtgttgtgcttagtaaaatg
aattttgagtcttttgtaaaaggtcttcttctagtccgtcagtatagagttgaagtttat
aagaataaagctggaaataaggcctccaaggagaatgattggtatttggcatttaaggct
tctccaggtaatctttcacagtttgaagacattctgtttggtaacaatgatatgtcgtcg
tccattggagttgtgggtattaaaatatccgtagttgacggccaaagacaagttggcgtt
gggtatgttgactccatccagaggaagctaggactgtgcgagttccctgataatgatcag
ttctccaatcttgaagctctcctggttcagattggacccaaggaatgcgttttaccagga
ggagagactaccggagacatgggaaaactgaggcagattattctgagaggagggattctg
atcacagacagaaaaagagctgaattttccgcaaaagacatttatcaggatctcaaccgg
ttgttgaaagccaaaaagggagaacagatgaatagtgctgtcttgccagaaatggagaat
caggtcgcagttgcatcgttgtctgcagtaatcaagtttttagaactcttatcagatgat
tcaaactttggacagtttgaactgactacttttgacttcaaccagtacatgaaattggat
attgccgcagtccgagcccttaaccttttccagggttctcttgaagataccacaggctct
cagtctctggccggattgctgaataaatgcaaaacccctcaaggacaaagattggttaat
cagtggattaagcagccgctcatggataagaacagaatagaagagagattaaatttagtg
gaagcctttgtagaagacgcagaattgaggcaaatcttacaagaagatttacttcgtcga
ttcccagatctgaaccgacttgctaagaaatttcaaagacaagcagcaaacttacaaaac
tgttaccaagtctaccagggtgtaaatcaactccctaacgttatacaggctctggaaaaa
tatgaaggaaaacaccagtccttgttgttggccatttttgtgacccctcttgtcgatctt
cgttccgatttctccaagtttcaggaaatgatagaaacaactttagacatggatcaggtg
gaaaaccatgaattccttgtaaaaccctcttttgatcctaatctgactgaactaagagaa
gtgatggatgacttggaaaagaagatgcagtcaacattaacaggcgcagccagagaccta
ggcttggagcctggcaagcagattaaactggattccagtgcacagtttggatattacttt
cgagtaacctgtaaggaagaaaaagtccttcgtaataataaaaacttcaccatagtagat
atccagaagaatggtgttaaatttgccaacagtaaattgacttctctcaatgaagagtat
accaaaaataaaactgagtacgaggaagcccagaatgccattgtgaaggaaatcatcaac
atttcttcaggctacgtagaaccgatgcagaccctcaacgatgtgttagctcagctggat
gccgtcgtcagctttgctcacgtctcaaatggagcccctgttgcgtacgtacgaccggtc
attttggagaagggacgaggaagaattctgttgacagcatctagacatgcttgtgttgaa
gttcaagatgaagttgcctttattcccaatgatgttcactttgagaaagataaacagatg
ttccacatcattactggccccaatatgggaggtaaatcaacatatattcgccaaaccggg
gtgatagttctcatggcgcagattgggtgtttcgtgccatgcgagtcggcagaagtgtcc
attgtggactgcatcttggctcgggtaggggctggtgacagtcaattgaaaggagtctcc
acgttcatggctgaaatgttagaaactgcttctattctcaggtctgccaccaaagactcg
ttaataatcatagatgagttgggaagaggaacctcaacctacgatggatttgggttggcg
tgggccatatcagagtacattgccacaaggattggtgccttttgcatgtttgcaacccat
tttcatgaacttactgccttggccgatcagataccaactgtcaataatctgcatgtcaca
gcactgaccactgaagagaccctaactatgctttatcaggtgaagaaaggtgtctgtgat
caaagttttgggattcacgtggcggaacttgctagtttccccaggcacgtaatagagtgt
gctaaacaaaaagccctggagctggaggagtttcagaatattggaaaatctcaagactat
ggtgaaacagaaccagcagcaaaacgatgctatctggaaagagagcaaggtgaaaaaatt
attcaggagtttctgtccaaggtgaagcaagtgccctttaccacaatgtcagaaggagac
atcacaatgaagttgaaacagctgaaagctgaggtgatagcaaagaataatggttttgta
aatgaaatcatttcacgaataaaggttactacataa
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