Loxodonta africana (African savanna elephant): 100654816
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Entry
100654816 CDS
T04351
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100654816 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100654816 (PARN)
Enzymes [BR:
lav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100654816 (PARN)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100654816 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
100654816
NCBI-ProteinID:
XP_003417760
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTESKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYVSPNTSKCPVMVPEEQKKF
IDQVVEKIEDLLQSDENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHIETLETEKKERYIV
ISKVDEEERKRREQQKHAKELEGLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMADYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVGKKNEEKQIKRKWTEDSWKEVERKRLN
TQCIPYALQNHYYSTNSFTTTSTVGKRNLSPSPEESGLEDRVSGEISDAELEKTDSCAET
LSEGRKKAKKLKRMKKELSPAGSISGSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagtaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttctcaggaatcagtgatggaccttcagtt
accgcgttaacaaatggttttgacactccagaagaaaggtatcagaagctcaaaaagcat
tccatggactttttattgtttcagtttggcctctgcactttcaagtacgaccacacagag
tcaaagtatataacgaagtcttttaacttttacgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgacttccttgcaagccaagga
tttgatttcaataaggtttttcgcaatggaattccatatttaaatcaggaagaagaaagg
cagttaagagagcagtatgatgaaaaacgtttgcagtccaatggtgcaggagctctgtcg
tacgtgtctcctaacacttcaaaatgtcctgtgatggttcctgaggagcagaagaagttt
attgaccaagtggtagagaaaatagaagatttgttgcaaagtgatgaaaacaagaacttg
gatttagagccgtgtaccgggttccaaagaaaactgatttatcagactctgagctggaag
tatcccaaaggcattcacattgagactttggaaactgaaaagaaagagcggtacatagtt
atcagcaaagtagatgaagaagaacgcaaaagaagagagcagcagaaacacgctaaagag
ctggagggactgaacgatgctgtgggattttctagagtcattcatgccattgctaattca
gggaaacttgttattggacacaacatgctcttggatgtcatgcacacggttcatcagttc
tactgcccgctgcctgcggatttaaatgagtttaaggagatgacaacatgcgtcttcccc
agactcttggatactaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttacgacacggcttctgagcagcttcacgaagcaggc
tatgatgcgtatatcacaggactgtgtttcatctccatggcagactacctaggttctttt
ctcagtcctccaaaaattcacgtgtctgccagatccaaactcattgaacctttttttaac
aagttatttcttatgagggtcatggatatcccctatctaaacttggaaggaccagacttg
caacctaagcgcgatcatgttctccatgtgacctttcccaaagaatggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcgtttgtttctctcagccagcctgaacaagtacaaatcgctgtcaataccagcagatac
gcagaaagttatcggatccagacctatgctgaatatgtgggcaaaaaaaatgaggagaag
caaatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
actcagtgtataccctatgctctgcagaatcactattacagcaccaatagctttacaact
accagcacagtaggaaagagaaacctgagtcccagtccagaagaatctggcttggaggac
agagtgtcaggggagatttctgacgctgaacttgagaagacagattcctgtgcagaaacc
ctctcagagggaaggaaaaaggccaagaaattaaaaagaatgaagaaagagctttctcca
gcaggaagcatctcgggcagctcagccaagctctttgaagtccctgatacgtggtaa
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