Loxodonta africana (African savanna elephant): 100654830
Help
Entry
100654830 CDS
T04351
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X2
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03082
ATP-dependent chromatin remodeling
lav04714
Thermogenesis
lav05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
100654830 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
100654830 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
100654830 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lav03021
]
100654830 (SMARCA2)
03036 Chromosome and associated proteins [BR:
lav03036
]
100654830 (SMARCA2)
Transcription machinery [BR:
lav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
100654830 (SMARCA2)
Chromosome and associated proteins [BR:
lav03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
100654830 (SMARCA2)
Chromatin remodeling factors
BAF complex
100654830 (SMARCA2)
PBAF complex
100654830 (SMARCA2)
GBAF(ncBAF) complex
100654830 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
100654830
NCBI-ProteinID:
XP_003420529
LinkDB
All DBs
Position
Unknown
AA seq
1573 aa
AA seq
DB search
MSTPTDPGTMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPAM
GSADFPQEGMHQMHKPIDGMHDKGIVEDIHCGSLKGTGMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPMSGGGPTPPQMPPSQQGALIPGDPQAMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQPQPQPQPPQPQPQPQPQQPAL
VNYSRPAGPGPELSGPSAPQKLPAPAPSGRPSPAPPTTAQPPAAAVPGPSAPPPAPGQPS
PIVQLQKQSRISPVQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKAT
VELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQK
IEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETER
IEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKK
KRRRRKKKAEENAEGGESALGPDGEPIDDSSQMSDLPVKVTHTETGKVLFGPEAPKASQL
DAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQEMEEKILLDPNSEEVSEKDAKQI
IETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVS
LYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAP
SVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMK
NHHCKLTQVLNTHYVAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPF
AMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKIL
YRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSS
GVINGAELYRASGKFELLDRILPKLRATGHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLD
GTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQ
DRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFL
QAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEE
DELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEM
EEEVRLKKRKRRRNVDKEPAKEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINY
KDRCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR
NHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDETN
EEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQD
ENEQSEASATDDE
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggcacgatgccccacccggggccttcgccagggcccgga
ccctccccaggacccattctgggacctagccctgggccaggaccatccccaggttccgtc
cacagtatgatgggaccaagtccgggacctccaagtgtctcacacccgatgccggcgatg
gggtctgctgacttcccacaggaaggcatgcatcagatgcacaagcccattgatggtatg
cacgacaaggggattgtagaagacatccactgtggctccttgaagggcaccgggatgcga
cccccacacccaggaatgggccctccccagagtccgatggatcagcacagccaaggttat
atgtctccgcacccatctccactgggagccccagagcatgtatccagccccatgtctggc
ggaggcccgacgccaccccagatgccaccgagccaacagggcgccctcatcccgggcgat
ccgcaggccatgagccagcccaacagaggcccctcgcctttcagtcctgtccagctgcac
cagcttcgagctcagattttagcttacaagatgctggcccggggccagcccctccccgaa
acactgcagctcgcggtccaggggaaaaggacgttgcctggcatgcaacaacagcagcct
cagcctcagccccagccgccgcagccgcagccccagccgcagccccagcagccggccctc
gtgaactacagcagaccagctggcccagggcccgagctgagtggcccgagcgccccgcag
aagctgcccgcccctgcgcccagtggccggccctcacctgcgccccccaccaccgcgcag
ccccccgcggctgctgtgcccgggccctctgcaccaccgcccgccccggggcagccctcg
cccatcgtgcagctgcagaagcagagccgcatcagccccgtccagaagccgcagggcctg
gaccccgtggagatactgcaggagcgcgaatacagactccaggcccgcatagctcacagg
atacaagagctggaaaacctgcctggctccctgccaccagatttacgaaccaaagcaacc
gtggaactgaaggcactccggttacttaatttccagcgtcagctgaggcaggaggtggtg
gcctgcatgcgccgggacacgaccctcgagacggctctcaactccaaggcctacaaacgg
agcaagcgccagactctgagggaagcgcggatgacggagaagctggagaagcagcagaag
attgagcaggagaggaaacggcggcagaagcaccaggaatacctgaacagtattctgcaa
catgcaaaagactttaaggagtaccatcggtctgtggctgggaagatccagaagctttcg
aaagccgtggcgacttggcatgccaacactgaaagggagcagaagaaagagacggagcgg
attgaaaaggagagaatgcggagactgatggctgaagatgaagaaggctatagaaaactg
attgatcaaaagaaagacaggcgtctagcttaccttttgcagcagacagacgagtatgta
gccaacctgaccaacctggtttgggagcacaagcaagcccaagcagccaaagagaagaag
aagaggaggaggagaaagaagaaggctgaagagaacgcagagggaggggagtcagccctg
gggccagatggagagcccatagatgacagcagccagatgagtgacctgcccgtcaaggtg
acccacacggaaactggaaaggtcctcttcggaccagaagctcccaaagcgagtcagctg
gatgcctggttggaaatgaaccctggctatgaagttgcacctcggtctgacagcgaggag
agtgactccgactatgaggaggaggatgaggaagaagagtccagtaggcaggaaatggaa
gagaaaatccttctggacccaaacagtgaagaagtttccgagaaggacgctaagcagatc
atcgagacggccaagcaggacgtagatgatgaatacagcatgcagtacagtgctcggggc
tcccagtcctactacaccgtggctcacgccatctcggagcgagtggagaagcagtcagcc
ctcctcatcaacgggaccctgaagcattaccagctccagggcctggaatggatggtttca
ctgtataataacaatctgaatgggatcttagcggatgaaatggggctggggaagaccatc
cagactatcgcactcattacgtatctgatggagcacaaaagactcaatggtccttatctc
atcatcgtgcccctctcgactctatctaactggacatacgaatttgacaaatgggctcct
tctgtggtgaaaatttcctacaagggcacccctgccatgcgccgctccctggtcccccag
ctacggagtggcaaattcaacgtcctcttgacaacttatgagtacatcataaaagacaag
cacattcttgccaagatccggtggaaatacatgatcgtggacgaaggccaccgcatgaag
aaccaccactgcaagctgactcaggtcttgaacactcactatgtggccccaagaagggtc
ctcctgacggggaccccgctgcagaacaagctccctgagctttgggcccttctcaatttc
ctcctccccacgattttcaagagctgcagcaccttcgagcagtggttcaatgccccattt
gccatgactggagaaagggtggacttgaatgaggaagaaactatactgatcatccgacgt
ctccataaggtgttgagaccctttctgctgcggagactgaagaaagaagtagaatcccag
cttccagaaaaagtggaatacgtgatcaagtgcgacatgtcagctctgcagaagattctg
tatcgccacatgcaggccaaggggatcctcctcacagacggttctgagaaagacaagaag
gggaaaggaggcgcgaagaccctcatgaacaccatcatgcagctgagaaaaatctgcaat
cacccatatatgttccagcacatcgaggaatcctttgctgaacacctgggctattccagt
ggagtcatcaatggggctgagctgtaccgggcctcgggaaagtttgagctgctggaccgc
attctgccaaagttgagagcgacaggccaccgcgtgctgctcttctgccagatgacgtct
ctcatgaccatcatggaggactactttgctttccggaacttcctctacctgcgcctcgac
ggcaccaccaagtcggaagaccgtgctgctctactgaagaaattcaacgaacctgggtcc
cagtacttcattttcttgctgagcacaagagctggaggcctgggcttgaatctgcaggcg
gccgacactgtggttatcttcgacagcgactggaacccccaccaggatctgcaggcgcag
gaccgggctcaccgcatcggccagcagaacgaggtgcgcgtgctgaggctgtgcaccgtc
aacagtgtggaggagaagattctcgctgccgccaagtacaagctgaacgtggaccagaag
gtcatccaggcaggcatgttcgaccagaagtcttcgagccacgagcggcgggcgttcctg
caggccatcttggagcatgaagaggaaaatgaggaagaagacgaagtcccggatgatgag
actctgaaccagatgattgctcgacgggaagaagagttcgaccttttcatgcgtatggac
atggaccggcgccgggaggacgcgcggaacccgaagcgcaaacctcgcttgatggaggaa
gacgagctgccctcctggatcataaaagatgacgccgaggtggagaggctgacttgtgaa
gaagaggaagagaagatatttggcagggggtctcgccagcgccgggacgtggactacagt
gacgccctcacggagaagcagtggctaagggccatcgaagacggcaatttggaagaaatg
gaagaggaagtgcggcttaagaagcgaaaaagacgaagaaatgtggataaagagcccgcc
aaggaagacgtggaaaaagccaagaagaggagaggccgccccccagctgagaaactatca
cctaacccccccaaactgacaaagcagatgaacgccatcatagatactgtgatcaactac
aaagataggtgtaacgtggagaaggtgcccagtaattctcagttggaaatagaaggaaac
agttcagggcggcagctcagcgaggtcttcattcagttaccttcgaggaaagaattacca
gaatactatgaattaattaggaagcccgtggatttcaaaaaaataaaggagagaattcgc
aatcacaagtaccggagcctgggcgacctggagaaagatgtcatgcttctctgccacaac
gctcagaccttcaacttggagggctcccagatctatgaagactccattgtcttgcagtca
gtgtttaaaagtgcccggcagaaaattgccaaagaggaagagagcgaagatgaaaccaat
gaagaggaggaagaggaggacgaagaggaatctgagtctgaggcaaaatctgttaaggtg
aaaatcaagctcaacaaaaaagatgagaaagggcgggataaaggaaaaggcaagaaaagg
ccaaatcgaggaaaagccaaacccgtcgtgagcgatttcgacagtgacgaagagcaggat
gagaatgaacagtcagaagcaagcgcgactgatgacgagtga
DBGET
integrated database retrieval system
