Loxodonta africana (African savanna elephant): 100654986
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Entry
100654986 CDS
T04351
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03008
Ribosome biogenesis in eukaryotes
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100654986 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
100654986 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lav03021
]
100654986 (XRN2)
03019 Messenger RNA biogenesis [BR:
lav03019
]
100654986 (XRN2)
03009 Ribosome biogenesis [BR:
lav03009
]
100654986 (XRN2)
03016 Transfer RNA biogenesis [BR:
lav03016
]
100654986 (XRN2)
Transcription machinery [BR:
lav03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100654986 (XRN2)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
100654986 (XRN2)
Ribosome biogenesis [BR:
lav03009
]
Eukaryotic type
Pre-60S particles
RNases
100654986 (XRN2)
Transfer RNA biogenesis [BR:
lav03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100654986 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
100654986
NCBI-ProteinID:
XP_003411764
UniProt:
G3TDK6
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKRGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDIERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKKVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPGGILTPQALGSRNSPGSQVANNARQAAYEMRMHNNSSPSVSPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIASMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETKRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVEVPPELCHGIRG
KFSLDGEAVLPDQIVCSPVPLLRDLSHNTAISINFKDPQFAEDYVFKAVMLPGARKPAPV
LKPGDWEKSSNGRQWKPQLGFSRDRRPVHLDQAAFRTLGHVIPRGSGAGVYSNTAPPPAT
YQGSLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFERGVGAEPLLPWNRMLQTQ
NAAFQANQYQLLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYNWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggcttagccgcaagtacccgtccatcatcgtcaac
tgtgtggaggagaagccaaaagaatgcaatggtgtgaagattccagtggatgccagcaaa
cctaatccaaatgatgtggagtttgataacctgtatttggacatgaatggaatcatccac
ccctgtactcatcctgaagacaaaccagcaccaaaaaatgaagatgaaatgatggttgcg
atttttgagtacatcgacagacttttcaatattgtaagaccaagacgacttctctacatg
gccatagatggagtggcaccgcgtgctaaaatgaaccagcagcgttcgaggaggttcaga
gcatcgaaagaaggaatggaagcagcagttgagaagcagcgagtcagggaagaaatactg
gcaaaaggtggctttcttcctccagaagaaataaaagaaagatttgacagtaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgccagtgct
cctggtgaaggagaacataaaatcatggattacattagacgacaaagagcccagcctaac
catgacccaaatactcatcattgtttatgtggagcagatgctgatctcattatgcttggc
ctcgctacacatgagcccaactttaccattattagagaagaattcaagccaaacaaaccc
aaaccttgtggtctttgtaatcagtttggacatgaggtcaaggactgtgaaggtttacca
agagaaaagagaggaaagcatgatgaacttgcagatagtctcccttgcgcagagggagag
tttatcttccttcggcttaatgttcttcgtgagtatttggaaagagagctcaccatggcc
agcctgccatttacgtttgacattgagaggagcattgatgactgggtcttcatgtgcttc
ttcgtggggaatgacttccttcctcacttgccgtctttagagattagggaaggtgcaatt
gaccgtttggttaacatatacaaaaaagtggtacacaagactgggggctaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagaggaaggatgatgaggacagtttcagaagacgacagaaagaa
aaaagaaaaagaatgaagagagatcaaccagctttcactcctggtggaatattaaccccc
caagccttgggttcaagaaattcaccaggttctcaagtagccaataatgcaagacaagca
gcctatgaaatgaggatgcataataactctagtccttcagtatctcccaatacgagtttc
acttccgatggctccccatctccaataggaggaattaagcgaaaagcggaagacagtgac
agtgaacctgagccagaggacaacgtcaggctatgggaagctggttggaagcagcgatat
tataagaacaaatttgatgttgacgcagctgatgagaaattccgtcgtaaagttgtccag
tcttatgttgaagggctctgctgggttcttcgatattactaccagggctgtgcttcctgg
aagtggtattatccattccattacgcaccatttgcttcagactttgaaggtattgcaagc
atgccttcagattttgagaagggcacaaaaccgtttaaaccactggaacaacttatggga
gtttttccagctgcaagtggtaactttctgcctccatcatggcggaaactcatgagtgat
cctgattcgagcataattgatttctaccctgaagattttgccatcgatttgaatgggaaa
aaatacgcatggcaaggtgttgctctgttgccatttgtggatgagcgaaggcttcgggct
gctctagaagaggtctacccagaccttactccagaagaaactaaaagaaacagccttggt
ggtgacgttctgtttgtggggaagcatcacccactccatgacttcattttagagctctac
caaacaggttccacagagcccgtggaggtaccacctgagctgtgtcatgggattcgaggg
aagttttccttggatggagaagccgttctcccagatcaaatagtgtgttctcctgttccc
ctgttacgggatctatcacacaacactgcgatcagtattaactttaaagacccacagttt
gctgaagattacgtttttaaagccgtaatgcttccaggagcaagaaaaccagcaccagtg
ctgaaacctggcgactgggagaaatccagcaacgggcggcagtggaagccccagctgggc
tttagtcgcgaccggcgccctgtgcacctggaccaggcagcattcaggactttaggccat
gttatacccagaggctcaggcgctggcgtttacagcaacaccgcaccaccacctgccacc
taccaggggagcttgtacaggcccctgctgagaggacaagcccagattccaaaacttatg
tcaaatatgaggccccaagattcctggcgaggtcctcctccccttttccagcagcaaaga
tttgaaagaggtgttggggctgagcctctgctgccatggaaccggatgctccaaacccag
aatgcagccttccaggcaaaccagtaccagctactagccggacccggtgggtatccaccc
agacgcgatgatcgaggagggagacagggatatccccgagaaggaagaaaatacccgttg
ccaccaccctcaggaagatacaattggaattag
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