Loxodonta africana (African savanna elephant): 100656089
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Entry
100656089 CDS
T04351
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X3
KO
K12821
pre-mRNA-processing factor 40
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100656089 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lav03041
]
100656089 (PRPF40A)
Spliceosome [BR:
lav03041
]
Complex A
U1 snRNP components
U1 related factors
100656089 (PRPF40A)
Complex B
100656089 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
100656089
NCBI-ProteinID:
XP_003405890
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MQATSSEAGGESPQSCVPAAHSDWASGKPVSLLAPLIPPRSAAQPLTFGPGGRQPLRSLL
VGMCSGSGRRRSSQSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMM
PQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQTSMQPALPPGVNNMDVAAGTTSGAKSM
WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK
ESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEESTTTSAAPVPTTEIP
TTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSTSNTVSGTVPVTEPEVTSIVATVV
DNENTVTISTEEQAQLTSSTSAVQEQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAK
KTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYK
VQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMDVWNAISERDRL
EIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAE
DEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHG
QLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKD
KGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKR
KESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQ
HHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERS
YKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGK
DSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgtcgagtgaggctgggggcgaatcgccgcagagctgcgtgccggccgcg
cactcagattgggcttcggggaagcctgtcagcttattggccccgctgatcccgccccga
agcgcagcgcagcctttaacctttggccccggcgggcgccagccactcagatcgcttctt
gttggcatgtgtagcggcagtggccgccggcggagcagtcagagtccgacgatgaggccg
gggacgggagcagagcgtggaggcctcatgatgggacaccctggcatgcactatgccccc
atgggaatgcaccctatgggtcagagagcgaatatgccacctgtacctcatggaatgatg
ccacaaatgatgccccctatgggagggccaccaatgggacaaatgcctggaatgatgtct
tcagtaatgcctgggatgatgatgtctcatatgtctcagacttccatgcagcctgcctta
ccgccaggagtaaataatatggatgtagcagcaggtaccacatctggcgcaaaatcaatg
tggaccgaacataaatcacctgatggaaggacttactattacaatactgaaacaaaacag
tctacttgggagaaaccagatgatcttaaaacacctgctgagcaactgttatctaaatgt
ccttggaaggagtacaaatcggactctggaaagccttactattataattctcaaacaaaa
gaatcccgctgggccaaacctaaagaacttgaggatcttgaaggataccagaataccatt
gttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagc
agtaagcaagaagagtccactaccacctcagcagccccagttcctacaacagaaattccg
actacaatgagcactatggctgctgcagaagcagcagctgctgttgttgcagcggcagct
gctgcagcagcagctgctgcagcagccaatgccagtgcttccacgtctacttctaatact
gtcagtggaactgttccagttactgagcctgaagttacttccattgttgctactgttgta
gataatgaaaacacagtaactatttcaactgaagaacaagcacaacttactagtagtacc
tcggctgttcaagagcaaagtgttgaagtatccagtaatacaggagaagaaacatctaag
caggaaactgtagctgattttactcccaaaaaggaagaagaggaaagtcaaccagcaaaa
aaaacatatacttggaatacaaaggaagaggcaaaacaagccttcaaagaattattgaaa
gaaaagcgggtaccatctaatgcttcatgggagcaagctatgaaaatgattattaacgat
ccacgatacagtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgcttacaaa
gtccagactgagaaagaagaaaaagaagaagcaagatcaaaatacaaagaggctaaagaa
tcgtttcagcgtttccttgaaaatcatgaaaaaatgacttctacaaccagatacaaaaaa
gcagagcaaatgttcggagagatggacgtctggaatgcaatatcagaacgtgatcgtctt
gaaatctatgaagatgttttgttctttctttcaaaaaaagaaaaggaacaagcaaagcag
ttgcgaaagagaaattgggaagccttaaaaaatatacttgacaacatggctaacgtaaca
tactctactacttggtctgaagcccagcagtatctgatggataatccaacttttgcagaa
gatgaagagttacagaacatggacaaagaagatgcattaatttgcttcgaagaacacatt
cgggctttagaaaaggaagaagaggaagaaaaacagaagagtttgctgagagaaaggaga
cgacagcgtaaaaatagggaatcttttcagatatttttagatgaattgcatgaacatgga
cagctgcattctatgtcatcttggatggaattgtatccaacgattagctctgacattaga
ttcactaatatgcttggtcagcctggatcaactgcacttgaccttttcaagttttatgtt
gaggatcttaaagcacgatatcatgatgagaagaagataataaaagacattctaaaggat
aaaggatttgtagttgaggtgaatactacttttgaagatttcgtggcaataatcagttca
actaaaaggtcaaccacattagatgccggaaatattaaactggctttcaatagcttacta
gaaaaagcagaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatgaaacga
aaagaatctgcctttaagagtatgttgaaacaagctgctcctccaatagaattggatgct
gtctgggaagatatccgggagagattcgtaaaagagccagcatttgaggacataactcta
gagtctgaaagaaaacgaatatttaaagattttatgcatgtgcttgagcatgaatgtcag
catcatcattcaaagaacaagaaacattctaagaaatctaaaaaacatcataggaaacgt
tctcggtctcgatcggggtcagattcagatgacgatgatagccattcaaagaaaaaaaga
cagcgatctgaatcccgttctgcttcagagcattcttctagtgctgagtctgagagaagt
tacaagaagtcaaaaaagcataagaagaagagcaagaagaggagacataaatctgactct
ccagagtctgatgctgagcgagaaaaggacaaaaaagaaaaggatcgggaaagtgagaag
gacagaaccaggcaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaag
gattctggtaattgggatacttccggcagtgaactgagcgaaggggaattagaaaagcgc
agaaggacccttttggagcaactggatgatgatcaataa
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