Loxodonta africana (African savanna elephant): 100656950
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Entry
100656950 CDS
T04351
Symbol
VPS13A
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
lav
Loxodonta africana (African savanna elephant)
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lav04131
]
100656950 (VPS13A)
Membrane trafficking [BR:
lav04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
100656950 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Motif
Other DBs
NCBI-GeneID:
100656950
NCBI-ProteinID:
XP_003407426
LinkDB
All DBs
Position
Unknown
AA seq
3177 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLSLGIWGGAVSLKNLKIKENALHELDVPFKVKAG
HIGNLSLVIPWKNLYTQPVEAVLEEIYLLIVPSSIIKYDPLKEEKQILEAKQQELKRIEE
AKQKVADQEQPKEEKQDTFIEKLVTQIIKNLQVKISSIHIRYEDDITNRDNPLSFGISLQ
NLSLQTTDQDWVPCLHNESEKLFRKLVRLDNLFAYWNVKSEMFYHYDYDESLNSLKNGIV
NENIVPEGYDFVFRPISANAKLQMNRRSDFDFSDPKINLDVELHDIAIELNKPQYFSLME
LLESVDMMKQNLPYRKFKPDVPLHYHAREWWAYAINGVLEVNIRPSLRMWSWKHIRDHRQ
KVKQYKELYKKKLTTKKLAGDILLPLEELEKILDVFNLTLTRQQAEVEVKKAGYKIYKEG
AKDSEENKGWLDWLWSWSEASCKEQPDVKPGTLEEMLTPDEKAKLYEAIGYSETAVDPTL
PKTFEAMKFFLHLKSMSIVLRENHQKPELLEILIEEFSTLVVQRPGAQAIKFETKIDSFH
ITGLPDNFTKPRLLSSLDDATSLFQITFEINPIDETVAQRCIIEAEPLEMIYDARTVNSI
VEFFRPPQDVHLTQLTSATLMKLEEFRDKTATGLLYIIETQKVLDLRINLKASYIIVPQD
GIFSPASNLLLLDLGHLKVTSKNRSELPDVKPGEASLEEIMRRAYDTFDIQLTSIQLLYS
RAGDNWKEARKLNVSTQHILIPMQFNVELSKAMVVTDLRMPKFKIFGKLPLISLRVSDKK
LQGIMELVESIPKPEPAPDVSDPAKSVEIQGPTTFGTSQISQKMFPVLELPPIIEDDSEE
EFFDAPCSPLEEPLQLPTTAKCSRHRQFQKQDYSKNMTECKIRFEVPEVLIQFYHLVGDC
ELPVVEFDVLGLGTQIEFRTYDLKANAFLKEFCLKCPEYLDEDKKPVYVITTLDNTMEDL
LTLEYVKAEKNVSDLKSTYNNVVQLLKVNFSSLDIHLHTEALLNTMNYFNNILPQSEEKS
APVHIVENEDKGDVIKKLSSKLSKDEDIITLQILAELSCLRIFIQDQKRKISEIKIEGLD
SEIIMRPKVTEINAKLRNIIVLDSDVMAVYKKAVYITGKEVFSFKMISYMDATAGSAYTD
MNVADIQVNLTVGCIEVVFVTKFLYSILAFIDNFQAAKQALTEATVQAAGMAATGVKELA
QRSSRMALDVNIKAPVVVIPQSPVSENVFVADFGLITMTNTFHMIAESQSNPPPVIDLIT
VKLSEMRLYRSQYINDAYQEVLDILLPLNLEVVIERNLSWEWYQEVPGFNINAQLKPMEF
ILSQEDITTVFKTLYGNIWYEEGGSASPAVMKDQSSVTSGVTNASHHSGGTTVVTAAVVE
VHSRASQVKTTLNISFKTDYLTMVLYSPSPDQTSFRDVRDPSLQLAEFRLENIISTLKMY
TDDSTFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDVRYKRVRDGWVSDLVF
QEMYICASVEFLMTVANVFLEAYSTGTAVETSVQAWSSKEEVPVAEPEKWEINVMIKNPE
FVFVADMTRNDAPALVITTQCEICWKGDLENETMTAAIKDFQVRACPFLPVKRKGNVTTV
LQPCDLFYQATRIGTDPQVIDMSVKSLTLKVSPVIINTVITITSALYATKETTLKEATSS
AAQLWEKKDTKNLKMWFLEEPNEAENTAPTTELVPKGEMIKINIDSIFIVLEAGIGHRTV
PMLLAKSRFSGEGKNWSSLINLHCQLELEVHYYNEMFGVWEPLRFFFSPLVLPFSYGTFV
GDFQVFPMKKKARKAIVESDTEEENYRVPEYKTIFNFYSKDQLNITLSKCGLVMLNNLGK
AFTEAATGSSDVFLKDLAPFMIINSLGLTISVSPSDSFSVLNVPMAKSYTLKNKESLSMD
YTGTKDNDHFSAMTSLSSKLFFILLTPVNHSTADKIPLTKVGRRLYTVRHRESGVERSIV
CQIDAVEGSKKVTVRSPVQIRNHFSVPLFIYEGDTLLGTASPENEFNIPLSSYRSLLFLK
PEDEGYGVCEGIEFEEIIKNDGALIKKKCRPTNPSKKPFIVNIVPEKDNLTFLSVYSEDG
WDLPYIIHLWPPILLRNLLPYKIAYYIEGTEHRIFTLNEGCSAQIYTAELDKAKLHLKLL
DYLNHDWKSEYHIKPNQQDIGFINFTCVTEIEKTDLDIAIHVTYNTGQVVVAFHSPYWMV
NKTGRMLQYKADGIHRKHPPNYTKPVLFSFQPKHFFNDNKVQLMVTDSELSDQFSIDTVG
SHGAVKCKALNMEYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYCVSVAEEGSDKWLSL
DLEQCIPFWPEDASNKLLIQVEGSQGPPKKIYFNRQENCILLRLDNELGGIIAEVHLAEH
STIITFSDYHDGAATFLLINHTKDDLVQYKQSSLSQIEDSLPPGKAVFYTWADPVGSRKL
KWKCGKSHGEVTQKDDMMTPITVGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAE
IAEQEIVLSLQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKQTEKLE
KEFKEYTESSPSEDKIIELDTNIPVRLTPSGSNMKILQPHVIAVRRNYLPALKVEYSTSA
HQSSFRIQIYRIQIQNQIHGAIFPFVFYPIRPPKSVTMDSAPKPFTDVSIVMRSAGHSQI
SRIKYFKVLIQEMDLRLDLGFVYALAELMTEAEVTEKTEVELFHKDIEAFQEEYKTTSLV
DTSQVSLYEYFHISPIKLHLSVSLSSGREEAKDSKQDGGLIPVHSLNLLLKSIGATLTDI
QDVVFKLAFFELNYQFHTTPELQSEVVRHYSKQAIKQMYVLILGLEVLGNPFGLIREFSE
GVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASRITSAMAKGVAAMTMD
EDYQQKRREAMNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGV
GKGLVGAMARPTGGIIDMASSTFQGIKRATETSDEVESLRPPRFFNEDGVIRPYRLRDGT
GNQMLQVMENGRFAKYKYFTHVMINKTDMLMITKRGVLFVTKGTFGQLTCEWQYSFDEFT
KEPFIVHGRRLRIEAKERVKSVFHAKEFGKIINFKTPEDARWILTKLEEAREPSPSP
NT seq
9534 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtctgtggtcgtggacgttttgaaccggttcttgggggactatgtggtg
aacctggacacgtcccagctctctctgggcatctggggaggagctgtgtccctcaagaat
ctcaaaattaaagaaaatgccctgcatgagctggatgtaccctttaaagttaaagctggt
catataggtaatcttagtcttgtaattccatggaaaaacctttatacgcaaccagttgaa
gctgtattggaagaaatatatttactcatagtgccttcttctataataaaatatgatcct
ttaaaagaagaaaaacaaatcttggaagcaaaacaacaggaactaaaaagaatagaagaa
gcaaaacaaaaagtagctgatcaagaacaacctaaggaggagaaacaggacacttttata
gaaaaattagttactcagatcataaaaaatcttcaagtgaaaatttccagcatccatatt
cgctatgaagatgatatcacaaatcgagacaatccactgtcatttggtatttctcttcaa
aatctcagcttgcagacaactgatcaagactgggttccgtgtttacataatgaaagtgag
aaactatttcgtaagttagtccgattggataatctttttgcctattggaatgtgaagtct
gagatgttttatcattatgattatgatgaatcattgaacagtttgaagaatggcattgtc
aatgaaaatattgttccagaaggttatgattttgtattccgtcccatatctgctaatgcc
aaacttcagatgaatcgccgatcagattttgacttttctgaccccaaaataaatctggat
gttgagttacatgacatagccattgaacttaataaaccacagtatttcagtcttatggag
cttcttgaatcagttgatatgatgaagcaaaatctgccatacaggaaattcaaacctgat
gtacctcttcactaccatgccagggaatggtgggcttatgctataaatggtgttcttgaa
gtaaatattcgtcccagcttacggatgtggtcatggaagcatattagagatcataggcaa
aaagtgaagcaatataaagaactgtataaaaaaaagttaacaactaagaagttagctggt
gacattctcctgcctttggaggagctggaaaagatcctggatgtatttaatttaacttta
acaagacaacaggcagaagttgaggtaaagaaagctggatacaagatttacaaagaaggg
gcaaaagattcagaggaaaataaaggatggttagactggctgtggagttggtcggaagca
agctgtaaagaacagccagatgttaaacctggaactcttgaagaaatgttgacacctgat
gaaaaagctaaactctatgaagcaattggttatagtgaaacagcagttgatccaaccttg
ccaaaaacatttgaagccatgaagtttttccttcacttgaaaagtatgtctattgttcta
agagaaaatcaccagaaacctgagctgttagaaattttaatagaagaatttagtactttg
gttgtgcaaaggccaggagcacaagcaataaaatttgaaaccaaaatagactcatttcat
attactggcttaccagataatttcacaaaacctcgtctcctgtcttcactggatgatgct
acctcactgtttcaaattacatttgagataaacccaatagatgaaactgttgctcaaagg
tgtatcatagaagctgaacctttagaaatgatatatgatgcaagaacagtgaatagtata
gtggaattcttcagacctccacaagatgtacacctaacacagctgacttcagcaactttg
atgaaacttgaagaatttcgtgataagacagcaacaggtctactgtatattattgaaaca
cagaaagttcttgatctcagaattaatttgaaggcatcatatattattgttccacaagat
ggaatttttagtcctgcatcaaatctacttcttttggatcttggtcatctaaaggtgaca
agtaaaaatcgttcggaattaccagatgtaaaaccaggcgaggccagtcttgaagagata
atgcgtagagcttatgatacatttgatattcagcttacaagcatacagctgctttacagc
agagctggtgataactggaaagaagcacgaaaactcaatgtatctacacagcatattttg
atacctatgcagttcaacgtggaactttctaaggccatggttgtcacagatttaaggatg
cctaaattcaagatttttggaaagttacctctcatttctttacgagtctcggataaaaaa
ctgcaagggattatggaattagttgaaagcattccaaaacctgaacctgcacctgatgta
tctgaccctgctaaatcagttgagattcaagggcccactacttttggaacatcacagatt
tcacagaaaatgtttcctgtcttggaacttccgcccattatagaagatgactcagaggag
gaattttttgatgcaccatgtagtccgttggaagaacctcttcagctcccgactacagct
aaatgttctagacacagacagtttcaaaagcaggactattcaaaaaatatgactgagtgt
aaaattagatttgaagtaccagaggttttgattcagttttatcaccttgttggagattgt
gaactgcctgtggtagaatttgatgttttaggattggggacacaaattgagtttagaaca
tatgatttgaaagcaaatgcctttttgaaagagttctgcttaaaatgcccagaatacttg
gatgaagacaagaaaccagtttatgtgattacaacattggataacaccatggaagacctg
ttaacactggaatatgtgaaggcagaaaagaatgtatcagacttgaagagtacctataac
aatgttgtgcaactactcaaggtgaacttttcttctttggatattcatttacacactgaa
gcacttctgaataccatgaattattttaataatatccttccacaatcagaggaaaaatca
gccccagtgcatattgtggagaatgaagacaaaggagatgtcattaaaaaattatcttct
aaactatccaaggatgaagatattattaccttgcagatacttgcagaattatcgtgttta
cggatttttattcaagaccagaaacgtaaaatttctgaaattaaaattgaaggacttgat
tctgaaataattatgagacctaaagtaactgaaataaatgcaaagctaagaaacataatt
gttttggattctgatgtaatggctgtctacaaaaaggccgtttatatcaccggaaaagaa
gtctttagcttcaaaatgatttcttacatggatgcaactgcgggttctgcgtacacagat
atgaacgtggccgacattcaggttaatttaactgttggctgcattgaagttgtttttgtc
acaaaatttctatattctatactggcttttatagacaattttcaagcagccaaacaagcc
ttgactgaggcaactgttcaggcagcaggaatggctgctactggtgtaaaagagctggca
caaaggagttccagaatggcactggatgttaacatcaaagccccagttgtagtcatccca
cagtctccagtttctgaaaatgtttttgttgctgattttggactaattacaatgacaaat
acgttccatatgatagcagagagtcagagcaatcccccacctgttattgatttgataacg
gtaaagctgagtgaaatgcgactatacaggtctcagtatattaatgacgcataccaggaa
gtactggatatactactgccattaaatcttgaggtggttattgagcgaaatttatcctgg
gagtggtaccaggaggttcctggttttaatataaatgctcagctaaagcccatggagttc
attctcagtcaagaagatataacaactgtttttaaaacattgtatggcaatatatggtat
gaagaaggtggcagtgcctcccctgctgtaatgaaggaccagtctagtgttactagtgga
gttactaatgcctcacaccattcaggaggaacaactgtggtgacagctgctgtggtagaa
gtacattcacgtgcctctcaagttaagacaacgttaaatataagtttcaagacagactat
ctcaccatggtactgtatagtccgagtcctgatcagacttcctttagagatgttcgtgat
ccttctctgcaacttgctgaatttagattggagaatattataagtactttaaaaatgtat
acagatgactcaacattttcttccttctcattaaaaaactgtatcttagatgataaaagg
cctcatgtcaagaaggcaactccgagaatgataggactgacagttgggtttgacaaaaag
gacatgatggatgtacgatacaagcgagtcagagatggttgggtttctgatttagtcttt
caagaaatgtatatttgtgcaagtgtggaatttctgatgacagttgcaaatgtctttctt
gaggcctatagcacaggcactgctgtagaaaccagcgttcaagcgtggtcttctaaggaa
gaagtgcctgtagcggaaccagaaaagtgggaaataaatgttatgattaaaaatcctgag
tttgtgtttgtggctgacatgacaagaaatgacgcccctgccttagtcattaccacacag
tgtgaaatttgttggaaaggcgatcttgaaaatgaaacaatgactgctgccattaaagat
ttccaagtgagagcatgcccgtttcttccagtcaagagaaaaggcaacgtaactactgtt
ttgcagccctgtgacttgttttatcaggctacgcggataggtacggacccacaagtgatt
gatatgtcagtaaaatccctgacactaaaggtttcaccagttatcataaataccgtgatt
accataacttcagcactttatgcaactaaggaaaccaccctgaaagaggctacttcttct
gcagcacagttatgggaaaagaaggatacaaagaatttaaaaatgtggttccttgaggag
ccaaatgaagctgaaaacacagcccctacaactgagttggtacccaaaggagagatgata
aaaataaacattgattccatttttatagttctggaggctggaattggtcatagaacagtg
cctatgcttttggcaaagtcacgtttttcaggggaaggcaaaaactggagttccctaata
aatctccattgtcaacttgagctagaagtacactattacaatgaaatgtttggtgtatgg
gagcctttgagattttttttttctcctctagtactgcccttctcctatgggacctttgtt
ggtgatttccaggtgtttccaatgaaaaagaaagcaaggaaagccattgttgaatcagat
actgaagaagaaaactacagagtgccagaatataaaactatctttaatttctattcaaaa
gatcaactaaacattacattatccaagtgtggccttgtaatgttaaataatttaggcaag
gcatttacagaagctgccaccggatcttcagatgtctttttaaaggatctagcaccattt
atgattataaattctcttgggctcactatctctgtttcaccaagtgattccttcagtgta
ctcaacgttcctatggcaaaatcatatacattgaaaaataaggagagtttaagtatggat
tatactggaactaaggacaacgatcatttcagcgcaatgaccagcctaagcagcaagctt
ttcttcattcttcttacacctgttaaccactctactgctgataagattcctttaacaaaa
gtgggacgacgtctgtacactgttagacacagagagtctggagttgaaagatctatcgtt
tgtcaaatagacgcggtggaaggaagtaagaaggtaacagttcgctccccagtgcagatt
agaaatcatttttcagtcccactctttatttacgaaggagacactttactgggaactgct
tcacctgaaaatgaattcaacatacctttatcatcttaccgatcactcctttttctgaag
ccagaagatgagggctatggagtatgtgaaggaattgagtttgaagaaattataaaaaat
gatggagctcttataaagaagaaatgtagacctacaaacccttccaagaaaccatttatt
gttaatattgttccagaaaaagataatttgacatttctttcagtgtattcagaagatggt
tgggacttaccatacataatccatttatggccacctatcctgctccgaaatcttcttcct
tacaaaattgcttattatatagaggggactgaacataggatttttactttaaatgaagga
tgttcagcccagatttatactgcagagttggataaagccaagctacacttaaaattactt
gactatcttaatcatgattggaaaagtgaatatcatataaaacctaatcaacaagacatt
ggtttcatcaactttacatgtgttacagaaatagaaaagactgatttagatattgctatc
catgtgacttataatactggccaggtggttgtggcatttcatagtccttattggatggtc
aataaaactggccgcatgttacaatacaaggcagatggaattcatcgaaagcatccacct
aattatacaaagccagttctcttttcttttcagccaaagcacttttttaatgacaataag
gttcagcttatggtaactgatagtgaattgtcagatcagttttcaattgatactgttggt
agtcatggagctgttaaatgtaaagccctgaatatggagtatcaggttggtgtcactata
gacctcagcagctttaatattaccaggattgtgacgtttacccctttttatatgattaaa
aacaaaagcaaatattgtgtatcagtggctgaagaaggaagtgataaatggctctctctt
gatttggagcagtgtatccccttttggcctgaggatgcttctaataaacttcttattcaa
gttgaaggaagtcaaggccctcccaaaaagatatattttaacaggcaagaaaattgtatt
ttattgcgtctggataatgagcttggaggcattatagcagaagttcatctggctgagcat
tctacaattatcacattttcagattatcatgatggagcagctacgttcctgttaataaat
cacaccaaggatgacctggttcagtacaagcaaagttctctcagtcaaatagaggactcc
cttcctcctggaaaagcagtattttatacatgggctgatccagttggctctagaaagctg
aagtggaagtgtggaaaaagccacggtgaagtaacacaaaaggatgatatgatgacacct
ataactgtggggaaaaagaccatttatttagtttcattctttgaaggcttacaacgcatt
attttattcactgaagacccgagggtatttaaagtaacatacgaaagtgagaaagcagag
atagcagagcaagaaattgtgttgtcattacaagatgttggaatttctctcgtcaacaat
tacacaaaacaagaagtagcctatatcggcattacgagttctgatgtggtttgggagaca
aagcccaagaaaaaggcaagatggaagcctatgagtgtaaagcaaactgagaagttagag
aaagaatttaaagaatatactgaatcttcaccttcagaagataagattattgaattggat
actaacattccggttcgcttaacacctagtggtagtaacatgaaaattctgcaaccacat
gtaatagctgtacggagaaattatctgccagcattaaaggtggaatatagcacatccgca
catcagtcatcctttagaattcaaatttacagaatacagatccagaaccagatacatggt
gctatatttccatttgtgttttatcctataagacctcctaagtcggtcaccatggattca
gcaccaaagccctttacagatgtcagtattgtcatgagatctgcagggcattcgcaaata
tcacgtattaagtatttcaaagtgttgatccaagaaatggatctcaggttagatcttggg
tttgtgtatgctttagcagaacttatgacagaagctgaggtgactgaaaaaacagaggtt
gaactttttcataaagatatagaagctttccaagaagaatataaaacaacttcattagta
gacacatcacaagtcagtctctatgaatactttcatatatctcccatcaagttacattta
agtgtttctctgagttccggtagagaagaagctaaagattcaaaacaagacggaggactg
attccagttcattctttaaatcttttgctgaagagtattggtgccactcttacagatatc
caggatgtagtttttaagcttgcattttttgaactcaactatcagttccatacaacacct
gaactacagtctgaagtagtaagacattattcaaaacaggccattaagcaaatgtatgta
ctcattcttggacttgaagttttgggaaatccctttggcttaattagagaattttccgaa
ggtgtagaagcatttttttatgaaccttatcagggagccatccagggccctgaagagttt
gtggagggaatggcactaggacttaaggcactagttggtggagctgttggtgggttagct
ggtgctgcctccagaatcaccagtgccatggctaaaggagtagcagctatgactatggat
gaagactaccagcagaagaggagagaagccatgaataagcaaccagctggtcttagagaa
ggcatcactcgtggaggaaaaggcttggtttctggttttgtaagtggcataacaggaatt
gtgacaaagccaatcaaaggagctcaaaaagaaggagcagctggtttctttaaaggtgtt
gggaaaggtttagttggagcgatggcaaggccaactggaggcatcatagacatggctagc
agtacatttcagggaataaaaagagctacagagacttccgatgaagtggagagtctgcga
ccccctcggttctttaatgaagatggagtcatcagaccttacaggttgcgagatggtact
ggaaatcagatgttacaggtcatggaaaatggaagatttgcaaaatataaatattttacc
catgtcatgatcaataaaacagatatgttaatgataactaaaagaggtgtattatttgta
accaaagggacatttggacagcttacatgtgagtggcagtacagttttgatgagtttacc
aaagagccattcattgttcatgggagaaggttacgtattgaggccaaggaacgggtgaag
tctgtattccatgccaaagagtttgggaaaattattaatttcaagaccccagaggatgct
aggtggatcctcacaaagctagaagaagcaagagaaccttccccaagcccctga
DBGET
integrated database retrieval system
