Loxodonta africana (African savanna elephant): 100658668
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Entry
100658668 CDS
T04351
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1
KO
K06527
vascular cell adhesion molecule 1
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04064
NF-kappa B signaling pathway
lav04514
Cell adhesion molecules
lav04668
TNF signaling pathway
lav04670
Leukocyte transendothelial migration
lav04933
AGE-RAGE signaling pathway in diabetic complications
lav05143
African trypanosomiasis
lav05144
Malaria
lav05417
Lipid and atherosclerosis
lav05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
100658668 (VCAM1)
04668 TNF signaling pathway
100658668 (VCAM1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
100658668 (VCAM1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
100658668 (VCAM1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
100658668 (VCAM1)
05143 African trypanosomiasis
100658668 (VCAM1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
100658668 (VCAM1)
05418 Fluid shear stress and atherosclerosis
100658668 (VCAM1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100658668 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
lav04090
]
100658668 (VCAM1)
04091 Lectins [BR:
lav04091
]
100658668 (VCAM1)
CD molecules [BR:
lav04090
]
Proteins
100658668 (VCAM1)
Lectins [BR:
lav04091
]
I-type lectins (Siglecs)
100658668 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
C2-set
ig
Ig_2
V-set
ICAM_N
ICAM1_3_5_D2
Ig_4
Ig_6
C1-set
Ig_5
Lep_receptor_Ig
TrkA_C
Adhes-Ig_like
tRNA_anti-like
Motif
Other DBs
NCBI-GeneID:
100658668
NCBI-ProteinID:
XP_010587810
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MPQKMVMILRTSNLLWLVFAASQAFKVEISPEAKIFAQIGDSVSLTCSTTGCDFPIFSWR
SQIDSPLNGKVKSEGNKSTLTMDPVSFDNECSYLCTAICGDEKLEKENQVEIYSLPKDPE
IYWSGTLEVGKTATIICLIPDVYPSDRLEVELLKDDSLLKNQEFLEGMGLKSLKNMSLEV
TFTPVIEDIGKTFVCRAKLNIGQTDEADPVTRERQTTKELQVYISPKNTVILVSHSTTLQ
EGDSVTMVCSSEGLPAPKIFWSKKLDNGNLQPLSENATLTLIAMRVEDSGTYVCEGINLI
GRDRKEVELVVQGQLFTVELSPDSPVAAQIGDSVVLTCSVTGCESPSFSWRTQIDSPLSG
KVRSEGTKSTLTLSPVSLENEHFYLCAVTCGHEMLEKEIQVKLYSFPSDPEIEMSDRLVN
GNPVTVSCKVPDVYPFDRLEIELLKGESIMMMKKDFVQDMDRQSPETKSLEMTFIPTTED
TGKVLVCRAKLNIDKMEFEPKQRQSTQTLYVNVVPKDMQLTAFPSESIKEGDTVTISCTC
GNVSETWIILKKKVETGDKMLNSIDGTYTIREAQLEDAGVYVCESKSEAGSQLRSLILDV
KGREKNQGYFSSELLVMYFACSLVIPAIGMTAYFARRANMKGSYDLV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagaagatggtcatgatcttgagaacttcaaatctactgtggctggtgtttgca
gcttctcaagcttttaaagtcgagatctcccctgaggccaaaatttttgctcagattggt
gactcggtctcactgacttgcagcaccacaggctgcgacttcccaattttctcctggaga
agccagatagacagtccgctgaatgggaaggtgaagagtgaggggaacaagtccacgctg
accatggatcctgttagttttgacaacgaatgttcttacctgtgcacagcgatttgcgga
gatgagaagctagaaaaagaaaaccaggtggaaatctactcactccctaaagacccagag
atctattggagtggcacactggaggttggaaagacggccaccatcatttgtttgatccct
gatgtttacccatctgataggctggaggtggagttactgaaggatgacagtctcctgaag
aatcaggagtttctggagggcatgggcttgaagtccctgaaaaacatgagtttagaagta
acctttactcctgtcatcgaggatattggaaaaacctttgtttgtcgagctaaattaaac
attggtcaaactgatgaagctgatcctgtgaccagagaaagacagaccacaaaagaactg
caagtctacatatcacccaagaatacagttatccttgtgagccattccacaactctgcag
gaaggtgactctgtgaccatggtgtgttccagtgagggcctgccagctccaaagattttc
tggagcaagaaattagataatgggaatctacagcccctttctgagaatgcaactctcacc
ttaattgccatgagggtagaagattctggaacttatgtatgtgaaggaattaatctgatt
gggagagacagaaaagaagtggaattagttgttcaagggcaactgtttacagttgagctc
tccccggactccccagttgctgctcagattggggactctgttgtgttgacgtgcagtgtc
acaggatgtgagtccccgtctttttcttggagaacccagatagacagcccactcagtggg
aaagtgagaagtgaggggaccaagtccacgctaaccctgagtcctgttagcttggagaat
gaacacttttacctgtgtgcagtgacctgtgggcatgagatgctggaaaaagaaatccag
gtgaaactctactcgttccctagtgatccagaaattgagatgagtgatcgtctagtgaat
ggaaaccctgtcaccgtaagctgcaaggttcctgatgtgtacccttttgaccgattggag
attgaactacttaagggggaaagtattatgatgatgaagaaagactttgtccaggacatg
gataggcaatccccagaaaccaagagtttggaaatgaccttcatccctaccaccgaagac
actggaaaagttcttgtttgtcgggctaagttaaatattgataaaatggagtttgaaccc
aaacaaaggcagagtacacagacactttatgttaacgttgtgccaaaagacatgcaactc
acagcttttccttctgagagcatcaaggaaggagacaccgtcactatttcctgtacatgt
ggaaatgtttcagaaacttggataatcctgaagaagaaagtagagacgggagacaagatg
ctaaactctatagatggcacatataccatacgtgaagcccagttagaggatgcaggagtg
tatgtatgtgaatctaaaagtgaggctggctcccaattaagaagcttaatacttgatgtt
aaaggaagagagaagaatcagggctatttttcttctgaacttctcgtgatgtattttgca
tgctccttagtaatacctgccattggaatgactgcctacttcgcgagaagagccaacatg
aaaggctcatacgatcttgtataa
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