Loxodonta africana (African savanna elephant): 100659445
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Entry
100659445 CDS
T04351
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X2
KO
K13126
polyadenylate-binding protein
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03015
mRNA surveillance pathway
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100659445 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
100659445 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100659445 (PABPC4)
03041 Spliceosome [BR:
lav03041
]
100659445 (PABPC4)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100659445 (PABPC4)
mRNA cycle factors
Stress granule specific factors
100659445 (PABPC4)
Spliceosome [BR:
lav03041
]
Complex C
Other components
Complex C specific factors
100659445 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
100659445
NCBI-ProteinID:
XP_003415566
LinkDB
All DBs
Position
Unknown
AA seq
644 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDF
GGAGAAQQGLTDSCQSGGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVRSPHPAMQPLQ
APQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNS
ELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcagccagcagctaccccatggcctccctgtacgtgggtgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagtcctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggttatgcctacgtcaacttccag
cagccggctgacgcggagcgggccctggacaccatgaactttgatgtgattaagggaaag
ccaatccgaatcatgtggtcacaaagggatccctctttgagaaaatctggcgtgggaaat
gtcttcatcaagaacctggacaaatccatagataacaaagcactttatgatactttttct
gcttttggaaacattctatcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtgtttgtgggcagatttaagtcacgcaaagagcgggaa
gcagagcttggagccaaagctaaggaattcaccaatgtttatatcaagaactttggggaa
gaggtggatgatgagagtctgaaagagctgttcagccagttcggtaagaccttaagtgtc
aaggtgatgagagatcccagtgggaaatccaaaggctttggctttgtgagttacgaaaaa
catgaagatgccaataaggctgtggaagagatgaatggaaaagaaatcagtgggaaagtc
attttcgtaggccgtgcacagaagaaagttgaacggcaggctgagttaaaacggaaattt
gagcagctgaaacaggagcgaattagtcgctatcagggggtgaacctttatatcaagaac
ttggatgacaccattgatgatgagaagttgaggaaagagttttctccttttgggtcaatc
acgagcgctaaggtgatgttagaggatgggagaagcaaagggtttggcttcgtctgcttc
tcatcccctgaagaggcaaccaaagcagtcactgagatgaatggacgcattgtgggctct
aagccactgtacgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcagcgggtggcaggaatgagagcactccctgccaacgccatcttaaatcag
tttcagcctgcagctggtggttacttcgtgccagcagttccacaggctcagggaagacct
ccgtattacacacctaaccaactagcacagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactgggtctgagtgcccggaccgcttggctatggacttt
ggtggggctggtgccgcccagcaagggctgactgacagctgccagtctggaggtgttccc
acagctgttcagagcttagcacctcgggctgctgttgcagctgctgctcctcgggctgtg
gcaccatacaaatacgcctccagtgtccgcagccctcatcccgccatgcagcctctgcag
gccccacagcctgcagtccacgtgcaggggcaggagcccctgactgcctccatgctggcc
gcagcacccccacaggagcagaaacagatgctgggagaacgtttgttcccgctcatccag
acgatgcattcaaacctagctggaaagattacagggatgcttctggagatagacaactct
gagcttctgcacatgctggagtctcctgaatctctccgctccaaggtggatgaagctgtg
gcggttctacaggctcatcatgccaagaaagaagctgcccagaaggtgggcgctgttgct
gctgctacctcttag
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