Loxodonta africana (African savanna elephant): 100662030
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Entry
100662030 CDS
T04351
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03020
RNA polymerase
lav03420
Nucleotide excision repair
lav05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
100662030 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
100662030 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
100662030 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lav03021
]
100662030 (POLR2A)
03400 DNA repair and recombination proteins [BR:
lav03400
]
100662030 (POLR2A)
Enzymes [BR:
lav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
100662030 (POLR2A)
Transcription machinery [BR:
lav03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
100662030 (POLR2A)
DNA repair and recombination proteins [BR:
lav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
100662030 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
100662030
NCBI-ProteinID:
XP_003416946
UniProt:
G3TV69
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNLGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcatgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctcagtccggatgaactgaagcgaatgtctgtgacagagggtggt
atcaagtacccagagacaactgaaggaggccgccccaagcttgggggactgatggatcca
aggcagggcgtgatagagcggaccggccgctgccaaacatgtgcaggaaacatgacagag
tgtcctggccactttggccacattgagctggccaagcctgtcttccatgtgggcttcctg
gtgaagaccatgaaagtcctgcgctgtgtctgcttcttctgctccaaactgcttgtagac
tctaacaacccaaagatcaaggacatcctggccaagtccaaggggcaacccaagaagcgt
ctcacacatgtctatgacctttgcaagggcaaaaacatctgcgagggtggggaggagatg
gacaacaagttcggtgtggaacagcctgagggcgacgaggatttgaccaaagaaaagggc
catggcggctgcgggcggtaccagccccggatccggcgctcgggcctggagctctatgca
gagtggaagcatgtcaacgaggactctcaggaaaagaagatcctgctgagccccgagcga
gtgcatgagatcttcaagcgcatatccgacgaggagtgttttgttctgggcatggagccc
cgctacgcacggccggagtggatgatcgtcacggtgctgcccgtgcctcccctctccgtg
cggcccgctgttgtgatgcagggctcagcccgcaaccaggatgacctgactcacaaactg
gctgacattgtgaagatcaataatcagctccggcgaaacgaacagaacggcgcggcagcc
cacgtcatcgcagaggacgtgaagctcctgcagttccatgtggccaccatggtggacaat
gagctgcctgggttgccccgtgccatgcagaagtctggccgtcccctcaagtctctgaag
cagcggttaaagggcaaggaaggtcgggtgcgagggaacctgatgggcaaacgtgttgac
ttctcagcccgcacggtcatcactcccgaccccaacctctccattgaccaggttggcgtg
ccccgctccattgccgccaacatgacctttgcggagattgtcacccctttcaacattgac
agacttcaggaactagtacgcagggggaacagccagtacccaggggccaagtacatcatc
cgagacaatggcgatcgcattgacttgcgtttccaccccaagcccagtgaccttcacttg
cagactggctataaggtggaacggcacatgtgcgatggggacattgttatcttcaatcga
caaccaactttgcacaaaatgtccatgatgggccacagggtccgcatcctgccctggtct
acttttcgcttgaatcttagtgtgacgaccccgtacaatgcagactttgatggggacgag
atgaacttgcacctgccacagtccctggagacacgggcggagatccaggagcttgccatg
gtgccacgcatgattgtcaccccccagagcaatcgcccggtcatgggcatcgtgcaggac
acgctcacggcagtgcgcaaattcaccaagagagatgtcttcctcgagcggggcgaagtg
atgaacctcctgatgttcctgtccacatgggacgggaaggtcccccagccagccatcctc
aagccgcgacccctgtggacgggcaagcagatcttctccctgatcatcccaggccacatt
aattgtatccgtacccacagcacccaccctgacgatgaggacagtggcccttacaagcac
atctctcctggggacaccaaggtggtggtggagaatggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacatcagctggctccctggtccacatctcctacctggagatg
ggccatgatatcacccgcctcttctactccaacatccagaccgtcattaacaactggctt
ctcatcgagggtcataccattggcattggggactccattgctgattcgaagacttaccag
gacattcagaacactattaagaaggccaaacaggatgtgatagaggtcattgagaaggcg
cataacaatgagctggagcccaccccagggaacactctacggcagacatttgagaaccag
gtcaaccgcattctcaacgatgcccgagacaaaactggctcctctgcccagaaatccctg
tctgaatacaacaacttcaagtctatggtggtgtctggggccaaaggctccaagatcaac
atctcccaggtcattgctgtcgtcgggcagcagaatgtggaaggcaagcggatcccattt
gggtttaagcaccggactctgcctcacttcatcaaggatgactatgggcctgagagccgt
ggctttgtggagaactcctacctggccggcctcacacccactgagttcttctttcatgcc
atggggggtcgtgaagggctcatcgacacagctgtcaagactgctgagactggatacatc
cagcggcgactgatcaagtccatggagtcggtgatggtgaagtacgacgcaactgtgcgt
aactccatcaaccaggtggtgcagctgcgctacggcgaggacggcctggcgggcgagagt
gtggagttccagaacctggctacccttaagccttctaacaaggcttttgagaagaagttc
cgctttgattataccaatgagcgggccctgaggcgcaccctgcaggaggatctggtgaag
gacgtgctgagcaacgcgcacatacagaacgagctggagcgggagtttgagcggatgcgt
gaggatcgggaggtgctcagggtcatcttcccaactggcgacagcaaggttgtccttccc
tgtaacctgctgcgcatgatctggaatgctcagaaaatcttccacatcaacccccgcctt
ccctccgacctgcaccccatcaaggtggtggagggagtcaaggagttgagcaagaagctg
gtgattgtgaacggggatgaccccctaagccggcaggctcaggagaatgccacgctgctc
tttaacatccacctgcggtccacgctctgctcccgccgcatggctgaggagttccggctc
agcggggaggccttcgactggctgcttggtgagatcgagtccaagttcaaccaggccatt
gcccatcccggggagatggtgggagctctggctgcacagtccctaggagaacctgccacc
cagatgaccttgaacaccttccactacgctggtgtgtctgccaaaaatgtgacgctgggt
gtgccccgacttaaggagcttatcaacatttccaagaagccaaagaccccttcccttacc
gttttcctgctgggccagtctgctcgggatgctgagagagccaaggacattctgtgccgc
ctagaacatacaacattgagaaaggtgactgccaacacagccatctactatgaccccaac
ccccagagcacagtggtggcagaggaccaggagtgggtgaatgtctactatgagatgcct
gactttgacgtggccaggatctccccctggctgttgcgggtggagctggaccggaagcac
atgacagaccggaaactgacgatggagcagattgcggaaaagatcaatgctggctttggc
gatgacttgaattgcatctttaacgatgataacgcagagaagctggtgctccgcatccgt
atcatgaacagtgacgaaaacaagatgcaagaggaggaagaggtggtggacaagatggat
gatgacgttttcctgcgctgcatcgagtccaacatgctgaccgacatgaccctgcagggc
attgagcagatcagcaaggtgtacatgcacctgccccagacggacaacaagaagaagatc
atcatcaccgaggacggggagtttaaggccctgcaggagtggatcctggagacggacggc
gtgagcctgatgcgggtgctgagcgagaaagatgtggacccagtgcgcaccacgtccaat
gacatcgtggagatcttcacggtgctgggcattgaggctgtgcggaaagccctggaacgg
gagctgtatcacgtcatctcctttgacggctcctacgtcaattaccggcacttggctctc
ttgtgtgataccatgacctgccgcggccacctcatggccatcacccggcatggcgtcaac
cgtcaagacactggacctctcatgaaatgttcctttgaggaaacggtggatgtgctcatg
gaagcggctgctcatggggagagtgaccctatgaagggggtgtctgagaacatcatgctg
ggccagctcgcgcccgctggcactggctgctttgacctcctgctcgatgcggagaagtgc
aagtatggcatggagatccctaccaacattcccggcctgggggctgctggacccaccggc
atgttctttggctcagcacccagtcccatgggaggaatttctcctgccatgacgccctgg
aacctgggtgccactccagcctatggcgcctggtcccccagtgttgggagcggaatgacc
ccaggggcagctggcttctctcccagtgctgcttcagatgccagtggcttcagcccaggt
tattcccctgcctggtctcccacgccgggctctccgggctccccgggcccctcaagcccg
tacatcccctcaccaggtggtgccatgtctcccagctactcaccaacgtcacctgcctat
gagccccgctccccagggggctatacgccccagagtccttcttactcccccacttcacct
tcctactcccctacgtctccatcctattctccaaccagtcccaactatagccctacatca
cccagctactcaccgacttcacccagctactcgccaacctcccccagctattctccaact
tctccaagttattctcccacgtcccccagctattctccaacttccccaagctactcaccg
acgtcacctagctattcaccaacctctcccagctactcaccgacctctcccagctattca
ccaacatcccccagttactcgccaacgtcacccagctattctcccacctcccccagctat
tcaccaacatctccaagctattcaccaacatctccaagctattcaccaacttccccgagt
tactcacccaccagccctaactattccccaaccagtcccaattataccccgacgtcacct
agctacagcccaacatcacccagctactcacctactagtcccaactacacgccaaccagc
cctaactacagccctacctctccaagctattctccaacttcaccgagctactccccaacc
tctccaagctattccccttcaagcccacgatacacaccacagtctccaacctataccccg
agttctcccagctacagccctagctcacccagctacagccctacttcgcccaagtatacc
ccaaccagtccttcctacagccccagctcaccagagtacaccccaacctcacccaagtac
tcgcctaccagccccaaatactcacccacctctccgaagtactctcctaccagccccacc
tattcgccaaccaccccaaaatactcaccaacatctcctacttattcaccaacctctcct
gtttataccccaacgtcccccaagtattcacctactagtcccacttactcgcccacttcc
cccaaatactcgcccaccagccccacctactctcccacctcccccaaaggctccacctac
tctcccacctcccctgggtactcgcctaccagccccacctatagcctcaccagcccggcc
atcagcccagatgacagtgacgaggagaactga
DBGET
integrated database retrieval system
