Loxodonta africana (African savanna elephant): 100662087
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Entry
100662087 CDS
T04351
Symbol
NPC1
Name
(RefSeq) Niemann-Pick C1 protein isoform X1
KO
K12385
Niemann-Pick C1 protein
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03265
Virion - Ebolavirus and Lyssavirus
lav04142
Lysosome
lav04979
Cholesterol metabolism
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus and Lyssavirus
100662087 (NPC1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
100662087 (NPC1)
09150 Organismal Systems
09154 Digestive system
04979 Cholesterol metabolism
100662087 (NPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lav02000
]
100662087 (NPC1)
Transporters [BR:
lav02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
100662087 (NPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
ACR_tran
Motif
Other DBs
NCBI-GeneID:
100662087
NCBI-ProteinID:
XP_010585114
LinkDB
All DBs
Position
Unknown
AA seq
1294 aa
AA seq
DB search
MRARSPALSILLLLLCLAQVFSQSCVWYGECGIAAGDKRYNCKYSGPPKPLPKDGYDLVQ
ELCPGFFFDNVSLCCDVQQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPQQSQF
LNVTATNDYVDPVTNETKTNVEELQYYIGDSFANAMYNACRDVEAPSSNDKALGLLCGKD
AKACNATNWIEYMFSKDNGQTPFTITPVFSDLPVLGMEPMNNATKGCDEAVDEVTGPCSC
QDCSVVCGPKPQPPPPPAPWIIFGLDAMYVIMWITYMAFVLVFFGSFFAVWCYRKRYFVS
EYTPIDSNMAFSVNASDKGMAWLLTSTLPSSPALPGEASCCDPLGAAFEGCLRRLFTRWG
VFCVRNPGCVVFFSLVFIGVCSSGLVFVRVTTNPIDLWSAPNSQGRREKEYFDMHFGPFF
RTEQLIIRSPHTSKHIYQPYPSGTDVPFGPPLNIEILHQVLDLQTAIENITALCNNQTVM
LRDICLAPLSPYNKNCTILSVLNYFQNSHSVLDHKVGDEFYTYADYHTHFLYCVRAPTSL
NDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYNDTEKLQRAQAW
EREFINFVKNYENPNLTISFTAERSIEDELNRESSSDVLTIVISYAIMFFYISVALGHIK
SCSRLLVDSKISLGVAGILIVLSSVACSLGIFSYVGIPLTLIVIEVIPFLVLAVGVDNIF
ILVQTYQRDERHQGETLDQQVGRVLGEVAPSMFLSSFSETAAFFLGGLSVMPAVHTFSLF
AGMAVFIDFLLQMTCFVSLLGLDIKRQEKNRLDILCCVRGADDGASVQASESCLFRFFKN
SYSPLLLKDWMRPIVVAIFVGVLSFSIAVLNKVEIGLSQSLSMPDDSYVMDYFKSLSQYL
HAGPPVYFVLEEGHDYTSLRGQNMVCGGMGCDNDSLVQQLFNAAELDSYTRVGFAPSSWI
DDYFDWVKPQSSCCRVSNITEQFCNASVVDPTCVRCRPLTPEGKQRPQGKDFMKFLPMFL
SDNPNPKCGKGGHAAYGSAVNILGNNTSVGATYFMTSHTVLQTSADFIDAMKKARLIASN
ITETMGRKGSNYRVFPYSVFYVFYEQYLTIIDDTIFNLGVSLGAVFLVTFVLLGCELWSA
VIMCVTIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSTKGSRV
SRAEEALSHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGVTHGLIFL
PVLLSYIGPSINKAKSSATQEQYRGTERERLLNF
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgagagcgcgcagcccggccctcagcatcctcttgctgctgctctgtctggcgcaggtg
ttttcccagtcctgtgtttggtatggagagtgcgggattgctgctggagataagaggtac
aattgcaaatattctgggccaccaaaaccattgccaaaggatgggtatgacttggtgcag
gagctctgtccgggattcttctttgacaacgtcagtctttgttgcgacgttcagcagctt
cggacgctgaaagacaacttgcagctgcctctacagtttctgtccagatgtccatcctgt
ttttataacctaatgaacctgttttgtgagctgacctgtagccctcaacagagtcagttt
ctgaatgtcacagcaactaacgattacgttgatcctgttacaaatgagacaaaaacaaac
gtagaagagttacagtactatatcggagacagctttgccaatgccatgtacaacgcctgc
cgggacgtagaggccccctcgagtaatgacaaggccctggggctgctgtgtgggaaggac
gccaaggcctgcaatgccaccaactggattgagtacatgttcagcaaggacaacgggcag
actcctttcaccatcacgcccgttttttcagatcttccagtgcttgggatggagcccatg
aacaatgccaccaagggctgcgacgaggctgtggatgaggtcacggggccctgcagctgc
caggactgctcagttgtctgtggccccaagccccagcccccgccccctcctgcaccttgg
ataatctttggcttggacgccatgtatgtcatcatgtggatcacctacatggcgtttgtc
cttgtgttttttggatcattttttgcagtgtggtgctacagaaaacggtattttgtctct
gagtacacccccatcgatagcaatatggcattttccgtcaatgccagtgacaaaggaatg
gcttggctcttaacctccaccctcccttcctctcccgcccttccaggggaggcatcctgc
tgcgaccctcttggtgcagcctttgagggctgtttgaggcggctgttcacacggtgggga
gttttctgcgtccgaaaccccggctgcgtcgtcttcttctccctggtcttcattggcgtg
tgctcatcgggcctggtgtttgtgcgggtcacgaccaatcccattgacctctggtcagcc
cccaacagccaggggcgccgcgaaaaggagtactttgacatgcactttgggccttttttc
cgcacagagcagctcatcatccgatccccccacacctccaagcacatctaccagccgtac
ccctcagggaccgacgtgccttttggacctccacttaacatagagattttgcaccaggtt
cttgatttacagacggccatcgaaaacattactgcactgtgtaacaaccagactgtgatg
cttcgggacatctgcttggccccgctctcaccgtataacaagaactgcaccattctgagc
gtgttaaattacttccagaacagccattccgtgctggaccacaaagtaggggacgagttc
tacacgtacgcagactaccacacacacttcctgtactgtgtacgggctcccacctctctg
aatgatacaagcctgctccacgacccgtgtctgggtacgtttggtggacccgtgttcccg
tggctcgtgttaggaggctacgatgatcaaaactacaataacgccaccgccctcgtgatt
acctttcctgtcaataattactacaacgacacagagaagctgcagagggcccaggcctgg
gaaagagagtttattaattttgtgaaaaattatgagaacccaaatctgaccatttctttc
actgctgaacgaagtattgaagatgagctaaaccgtgaaagcagcagcgatgtcctcact
attgtcattagctatgccatcatgtttttctacatttccgttgccttggggcacatcaaa
agctgcagcagacttctggtggactcgaagatctcactgggcgtcgcaggcatcctgatt
gtgctgagctcagtggcatgctccttgggcatcttcagctacgttgggatcccgctcacc
ctcattgtgatcgaagtcatcccattcctggtgctggctgtgggggtggacaacatcttc
attctggtccagacttaccagagagatgaacgtcatcaaggggaaacactggatcaacaa
gtgggcagggtcctgggggaagtggctcctagtatgttcctgtcatccttttcagagact
gcggcgtttttcttaggaggcttgtcggtgatgccagccgttcacaccttctctctcttt
gcgggaatggccgtcttcatcgacttcctccttcagatgacgtgttttgtgagtctcctg
ggattagacattaagcgtcaagagaagaatcggctggacatcctttgctgtgtgagaggc
gctgacgacggagcaagtgtccaggcctccgagagctgcttgtttcggttctttaaaaac
tcctattccccgcttctgcttaaggactggatgcggccgattgtggtagccattttcgtg
ggggtcctgtcattcagtatcgcagtgctgaacaaagtggaaattggattgagtcagtct
ctttcaatgccagatgactcttacgtaatggattacttcaagtccctcagccagtacctc
catgcgggtcctcctgtgtactttgtcctggaggaagggcatgactatacgtccctgaga
ggacagaacatggtgtgtggcggcatggggtgcgataacgattccctggtccaacagtta
tttaacgcggccgagctggacagctatacccgagtaggctttgctccctcgtcctggatt
gatgattatttcgattgggtcaagcctcagtcatcttgctgtagagtctccaatatcaca
gaacaattctgcaacgcttcagtggtcgaccctacctgcgtgcgctgccggcccctcacc
ccggagggcaaacagcggccccagggtaaagacttcatgaaattcctgcccatgttcctt
tctgacaaccccaaccccaagtgcggcaaagggggacatgctgcatatggttcggcagtt
aatatccttggtaataacactagtgtcggagccacatacttcatgacctcccacacagtg
ctgcagacctctgcagacttcatcgatgccatgaagaaagcccgattgatagccagtaac
atcaccgaaaccatgggccgtaaaggaagtaattaccgcgtatttccatacagtgtgttt
tatgtcttctacgagcagtacctgaccattattgatgacaccatctttaacctcggcgtg
tccctgggagcggtatttttggtgacctttgttctcctgggctgtgagctgtggtcagca
gtgatcatgtgcgtcaccattgccatgatcttggtcaacatgtttggggtcatgtggctg
tggggcatcagcctgaatgctgtgtccttggtcaacttggttatgagctgtggcatttcc
gtggagttctgcagccacattacgagggcgttcaccgtgagcaccaaggggagccgcgtg
agccgcgcggaagaggcgctgtcacacatgggcagttctgtgttcagtggaatcacacta
acaaaatttggagggattgtggtgttggcctttgccaaatctcaaattttccagattttt
tacttccggatgtatttagctatggtcttattgggagtcactcacggattaatattcctc
cccgtcttactcagttatataggaccatcgataaataaagccaaaagcagcgccactcaa
gagcaatacagaggtacagagcgggaacgactcctcaatttctag
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