KEGG   Loxodonta africana (African savanna elephant): 100662588
Entry
100662588         CDS       T04351                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
lav  Loxodonta africana (African savanna elephant)
Pathway
lav03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100662588 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lav03041]
    100662588 (SNRNP40)
Spliceosome [BR:lav03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100662588 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    100662588 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 100662588
NCBI-ProteinID: XP_003415497
UniProt: G3TCC5
LinkDB
Position
Unknown
AA seq 355 aa
MIEQQKRKGPELPLVPVKRQRHDLLLGAAGSGPGAGQQQGALLQAGPPRCSSLQAPIMLL
SGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGS
MLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIR
KKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS
LSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA
GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgatagaacagcagaagcgaaagggcccagagttacccctggttccagtcaagcggcag
cggcatgacttgctgttgggagcggcggggtcgggccccggagctggacagcagcaagga
gctttgctgcaagcggggcctccaaggtgttcctcccttcaagccccaatcatgctgctg
tcaggacatgaaggagaagtgtattgttgcaagtttcaccccaatggatccaccttagca
tctgcaggatttgaccgactgatattgttatggaatgtctatggtgactgtgataactat
gctacattgaagggacacagtggagccgtgatggaactgcattataacacagatggcagt
atgctcttctcagcatccacagataaaactgtagctgtgtgggacagtgagacaggcgag
agggttaaaagactgaagggacatacttcctttgtgaattcctgttatccagccaggagg
ggtccccagcttgtctgcactggcagtgacgatggtacagttaagctttgggacatccgt
aagaaagcagccatccagacatttcagaacacctaccaggtgctagctgtgaccttcaat
gacacaagtgatcagattatttctggtggcatagacaatgatatcaaggtctgggacctg
cgccaaaacaagttaacctacaccatgagaggccatgcagattcagtgactggcctgagt
ttaagttctgaaggttcttatcttttgtccaatgcaatggacaatacagtgcgtgtctgg
gatgtccggccatttgcccccaaagagagatgtgtgaaaatatttcaaggaaatgtgcac
aattttgaaaagaatcttcttagatgttcttggtcacctgatggaagcaaaatagcagct
ggctcagcggacaggtttgtgtatgtgtgggataccacaagcagaagaattctgtataag
ctgcctggccatgctggctccatcaatgaagtggctttccaccctgatgagcccatcatt
ctctcagcatccagcgacaagagactgtatatgggggagattcagtga

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