Loxodonta africana (African savanna elephant): 100663740
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Entry
100663740 CDS
T04351
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100663740 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100663740 (PNLDC1)
Enzymes [BR:
lav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100663740 (PNLDC1)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100663740 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
100663740
NCBI-ProteinID:
XP_003419273
LinkDB
All DBs
Position
Unknown
AA seq
531 aa
AA seq
DB search
MDVGAEEFEQLLPLLQELVLRADFVGLDIEFTGLRSTLSRPQQISLFDLPSEWYLKSRQS
VQQFTICQIGLSVFSRVKGESNKYVSHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQERKIKHSILCGNWRVRSSLDKDQIKMVIDRVTRWLALAEEGDW
MTLPGITGFQAFEVQLVLQQALPNIWTVPKDQGVTVKKVSKQHRWYLENTSCERERCWKE
KILLYAKGLSVLFQMLVKAQKPLVGHNMLMDLLHLHEKFFRHLPESYDQFKLNIHHLFPI
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIVHASKCEKYAETKCPH
EAAYDAFLCGSVLLKVAHLLLQRVHGSCSTPEPSFPQYLDVLAPYVNQVNLIRAGVPKIN
FSGPDFPSIRPPILILSVKRWPGVSEQQVYREFQNLCKFDIRRLTRSQFLLLTNKFKDAR
AILKEYRCHPDLQVSVYRYWRHSPNINCVLQVCGIISTWALVAFLLGRPGA
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgaggagttcgagcagctcttgcccctgctgcaggagctggttctc
cgcgcggacttcgtgggtctggacatagagttcactggccttcgctccaccctgtccagg
ccccagcagatcagcctgtttgacttgccatcagagtggtatctaaagagccggcagagt
gtccagcagtttacaatctgtcagattggattgtctgtgttttccagagtcaaaggagag
tccaacaagtatgtatcccattcatgtaacttctttctcttccctacaacgtttgggatt
ttggattcagaattctctttccaggcttctagtgttcagtttttgaatcagtatggcttc
gactataacaagtttctcaaaaatggaatcccatatatgaatgaagaacaagagaggaaa
attaaacacagtatcctgtgtgggaactggagagttcgcagttctttggataaagaccaa
atcaagatggtaattgatagagttacacggtggctggccctggcagaggaaggcgattgg
atgactctccctggcatcactgggttccaggcctttgaggtccagttggtgctgcagcaa
gccctccccaacatctggacggtgccgaaggaccaaggggtgacagtgaagaaagtgagt
aaacagcatcgctggtaccttgagaacacttcttgtgagcgcgagaggtgctggaaggag
aagattcttctctatgcaaaggggttatctgtcttgttccagatgctggtgaaagcccag
aagcccttagtgggacataacatgttgatggatctgctgcatcttcatgagaagttcttc
aggcatctcccagaaagctatgatcagtttaagctgaatatccatcacctatttcctatt
ctcattgacaccaagaatgtaacaaaggatatctggaaggaactgaatttcccaagggtt
tcaaatctttcagaagtttatgaagtccttaacagtgacttgaaccccactaagaattct
ggacccgtgattgttcatgcaagcaagtgtgaaaagtatgctgagaccaagtgcccccac
gaagcagcctatgatgcctttctctgtgggtcagttcttttgaaagtggctcacttgctt
ctacagagagtacatggcagctgttccacaccggagccctccttcccccagtacctggat
gtgctggccccctatgtgaaccaagtgaatcttatccgagctggggtcccgaaaatcaat
ttttctggtccggattttcccagtatccgacctcccatcctcatcctcagtgtcaagagg
tggccgggggtcagtgagcagcaggtctaccgggagttccagaacctctgcaagtttgac
atcaggcgcctcacacggagccagttcctgcttctgaccaataagtttaaggatgctcgg
gctatcttaaaggaatacagatgtcaccccgacctccaggtgtccgtgtatcggtactgg
agacattccccaaacatcaactgtgtgttacaggtctgtggcataatcagcacgtgggcc
ctggtggcctttctgctcggaagacctggcgcctga
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