Loxodonta africana (African savanna elephant): 100664129
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Entry
100664129 CDS
T04351
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100664129 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lav04147
]
100664129 (COL18A1)
00535 Proteoglycans [BR:
lav00535
]
100664129 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
lav00536
]
100664129 (COL18A1)
Exosome [BR:
lav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100664129 (COL18A1)
Proteoglycans [BR:
lav00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100664129 (COL18A1)
Glycosaminoglycan binding proteins [BR:
lav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100664129 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF959
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100664129
NCBI-ProteinID:
XP_023396792
LinkDB
All DBs
Position
Unknown
AA seq
1555 aa
AA seq
DB search
MAPDPSAGRGLLLLTCCLAAAHAHILGLSLPWFLRSADPTMTLASEPRKGSAVQPTADPT
THVAPQEGPTEQATAAAVRELPLEELEAGQGRAPTAPVALAQRPDMREENVAGVGAKVLN
VAQGIRSFIRLWNDAAPTESPTGAGTLAPVVPTDPLTLPESSSTAAGSRTAPGPSSTASS
SQDTPRTHSSTLPVPTQLLASSSRPRARLRKPLMPPPTPESAGAEEVGLLQLLGEPPPPQ
VIQIEDPDIGPAYVFGPDANSGQVARYHVPSPFFRDFSLLFHVKPATEGAGVLFAITDAA
QTEVHVGVKLSQVQDRQQQIQLLYTEPGAGRTHTAASFRLPSFARQWTRFALSVDGSTVA
LYVDCEEFQRLPFQRSPGGLELEPGAGIFVSQAGGADPDKFQGLIAELRVRGDPRVSPQQ
CLDEEEGDDTDGASGDFGSGHEDNQEHLTQEMGSSLKPIVPEAPPVTSPPLAGGSNTEDS
RTDEIEEATTVATLGTQTLPGVEQGRESDTRPVGSDVAAAWDSVEEVAPRPGSTGLKGQK
GEPGAQGLPGPVGPQGPAGPAIQSPDGSAAQAVPGPQGPPGPPGPSGRDGAPGRDGEPGD
PGEEGKQGNTGPQGFPGTPGEIGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRHDKLTFI
DMEGSGFGGDLETLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDIPGPAGLPGVPGQKG
LPGHPGPPGPPGPPGKEGRQGENGEKGSPGEVGTPGPKGDQGDPGPVGAPGQNGLAGDPG
PVGPPGPPGPPGPPGPPGPGLAAGFDDMEGSGVPFWSAGQGSVGPQGLPGLPGLKGDPGM
AGLPGAKGETGENGAPGIPGLPGREGTGGPQGPKGDKGSQGEKGEPGKDGVGKPGLPGPP
GLPGPILYVTSEQDKEIASVRGTKGSPGHTGFPGPAGPKGDLGSRGEPGFPGQKVRSLPS
RGCFPRGLPSWGCSPRGPPHGAPLLGIPPKGPSPRAPACDSCGQQGEPGFRGPPGPYGRP
GHKGEIGFPGRPGRPGMNGLKGEKGEPGNAAAGYSLRGPPGLPGPPGPPGPPGTPVYDSS
AYVNSGRPGPPGSPGYQGPSGPKGDKGEVGPPGPPGQFPFNFLQLEAEMKGEKGDRGDAG
QKGERGEPEGGGIFGSSVPGPPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEG
RQGPAGPPGPPGPPGLPSFPGPHRQTISVPGPPGPPGPPGPPGTTGASLGVKIWATYQTM
LNKVHEVPEGWLIFVAEREELYVRVRNGFRKVLLEARTPLPRGTVAALQPPVVHEGHLYS
WQEPPHSTARPWRSDGILANPPRLPDTQPYPGAPHYSSYVHLQPGRPTILPTHAHQDFQP
VLHLVALNSPLTGGLRGIRGADFQCFQQARAVGLAGTFRAFLSSRLQDLHSIVRRADRAD
VPIVNLKDEVLFPSWEALFSGSEGQLRPGARIVSFDGRDVLRHPAWPQKSVWHGSDPSGR
RLTESYCETWRTEDTMATGQASSLLAGRLLGQKAESCRNAFIVLCIENSLMTATS
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atggctccagaccccagcgctggccgtggcctcctgctgctcacctgctgcctggccgct
gcccacgcccacatactgggcctgagtttgccgtggttcctgaggtctgcggaccccacg
atgacactggcctccgagccccggaaaggctcagctgtgcagcctacagcagaccccacc
acacatgtggccccccaggagggccccaccgagcaggccaccgctgctgccgtacgtgag
ctgcccctggaggagctggaggctggccagggcagagcccctactgcccctgtggccctt
gcccagagaccagacatgagggaggagaacgttgccggcgtgggagccaaggtcctgaac
gtggcccagggcatccggagctttatccggctgtggaatgatgctgcccccactgagagc
cccaccggggcaggtaccctggcccctgtggtccccacggaccccctcactcttcctgag
tcctccagcactgccgctgggagcaggacggctcctgggccaagtagtacagcctccagc
tcacaggacaccccaaggacccattccagcaccttgccagtgcccacccagctgcttgcc
tcttcgagcagaccccgggcccggctcagaaagcctttgatgcccccgccaactccagag
agtgccggtgcagaagaggtggggctcctacagctccttggggagcccccacccccacag
gtcatccagattgaggaccccgacattggcccagcctacgtcttcggtccagacgccaac
agtggccaggtggcccgctaccatgtgcccagccccttcttccgggacttctccctgctc
ttccatgtgaagcctgccacggagggtgcaggtgtgctatttgccatcacagacgcggcc
cagacggaggttcacgttggtgtgaagctctcacaggtgcaggaccggcaacagcagatc
cagctcctgtacacagagccaggtgcagggcgcacccacacagccgccagctttcgcctg
ccatcctttgcccgccagtggacccgctttgcgctcagcgtggatggcagtactgtggca
ctctacgtggactgcgaggagttccagaggctgcccttccaaaggtccccgggaggcctg
gagctggagcctggtgctggcatctttgtgagtcaggctggaggagccgaccccgacaag
ttccaggggttgattgcagagctgagggtacgtggagacccccgagtgagcccccagcag
tgcctggacgaggaggagggtgatgacacagatggggcatcgggagactttggaagtggg
catgaggacaaccaggagcatctcacgcaagaaatgggctcttccctgaaacccatcgtg
cctgaggctcctccggtcacctctccacccttggctggaggcagcaacactgaagattcc
agaactgacgaaatcgaggaagcaacgacagtggctacgttaggaacccagaccctccct
ggtgtggagcaggggagagaaagtgacacccgtcctgtgggctcagatgtggctgccgca
tgggacagcgtggaagaggtggccccgaggcccggctctacaggcctgaaggggcagaag
ggggagccaggagcccagggcctgcctggccctgtcggtccccagggtcccgcaggccca
gccatccagagccctgatggctccgccgcacaggctgtccctgggccgcagggaccgcct
ggaccccctgggccatcaggaagggacggcgccccaggaagggatggtgagccaggagat
cccggcgaagaaggaaagcagggcaacactgggcctcagggcttcccgggaaccccagga
gagataggccccaagggcgagaagggggaccctggggtcgggccacgtggaccccctggg
ccccaggggcctccaggacctccaggaccatccttcagacacgacaagctgaccttcatc
gacatggaggggtctgggtttggtggtgacctggagaccctcaggggcccacgaggcttc
cccggcccccctgggccccccggcgtcccaggcctgcctggtgagccaggccgctttggg
gtgaacagctcagacatcccagggcctgcaggcctccccggtgtgcctgggcaaaagggg
ctcccggggcatcccggccccccgggacccccaggtcctccaggaaaagaggggcgacaa
ggagagaatggcgagaaaggaagccctggtgaagtgggcaccccaggacctaagggagac
cagggagaccctggccctgttggtgctcctgggcagaatggccttgcaggagaccctgga
ccagttggacctccagggcccccgggaccccctggaccccctgggccgcctgggccagga
cttgcagcaggatttgatgacatggaaggttctggagtacccttctggtcagcaggccaa
ggctccgttggaccacagggactgcccggcctgccaggactcaagggagatcccggaatg
gctgggcttcctggggcaaagggagaaactggagagaacggcgcccctgggatccctggc
ctccccggcagagagggtacaggcgggccacagggaccaaaaggagataaagggagccaa
ggagaaaagggcgagccagggaaggatggagtggggaagcctgggctcccagggcccccc
ggactcccggggcctatcctctatgtgacgtcggagcaggacaaagagattgccagtgtg
cggggaaccaagggcagtccggggcacacaggctttcctggaccggctggcccaaagggt
gacttgggctccagaggcgagcctggcttcccaggacagaaggtaaggagtctcccgtca
cggggctgcttccctcggggtctcccgtcatggggctgctcccctcggggtcctccccat
ggggctcctctccttgggatccccccaaagggcccctctcctcgggcccccgcatgtgat
tcctgtggccagcagggtgagccgggcttccgaggacccccaggcccctacggacgccct
gggcacaagggtgagatcggctttcctggacggccgggtcgcccagggatgaacggactg
aagggggagaaaggggagccagggaatgctgccgccggatacagcttgaggggtccgccc
ggcctcccagggcctccagggcccccaggccctcctgggacacctgtctatgacagcagt
gcatatgtcaactctggccgccctgggcctccaggatcaccagggtaccaggggccttct
ggaccaaagggtgacaaaggagaagtgggcccacctggtcccccagggcagttcccgttc
aacttcctgcagctggaggctgagatgaagggcgagaagggtgaccggggggacgctggg
cagaaaggagagaggggtgagccagaaggtggcggaatcttcggctccagtgtgccgggg
ccccctggcccccctggtccaccaggctaccctgggattccgggtcccaagggagagagt
atccggggtcagcctggcccaccaggccctcagggaccccccggcattggctacgaggga
cgccaggggcctgctgggcctcctggacctccagggcccccaggactcccctcgtttcct
ggcccacacagacagacaatcagcgtccccggcccccctggcccacctggccccccaggg
ccccctggaaccacgggtgcatccttgggtgtgaagatctgggccacgtaccagaccatg
ctgaacaaggtgcacgaggtgcctgagggctggctcatctttgtggctgagagggaggag
ctgtacgtccgggtccggaatgggttcaggaaagttctgctggaggcccggacaccactg
ccacgcggaacggtggctgccctgcagccccctgtggtccacgagggccacctatactcc
tggcaggagcctccccactctacagcacggccctggcggtcagacggcatcctggccaac
cccccacgcctgccggacacccagccctaccctggggccccgcactacagctcctacgtg
cacctccagccaggtcgccccaccatcctgcctacccatgcccaccaggacttccagcca
gtgctccacctggtcgccctcaacagcccgctcacgggcggcctgcgcggcatccgcggc
gctgacttccagtgcttccagcaggcacgggccgtggggcttgctggcaccttccgcgcc
ttcctgtcctctaggctacaggacctgcacagcatcgtgcgccgtgctgaccgtgcagac
gtgcccattgtcaacctcaaggacgaggtgctgttccccagctgggaggccttgttctcg
ggctccgagggccagctgaggcctggggcccggatcgtctcctttgatggcagggacgtc
ctgaggcaccctgcctggcctcagaagagcgtgtggcacggctcggaccccagcgggcgc
cggctaaccgagagttactgcgagacatggcggacagaggacacaatggccacgggccaa
gcctcctcactgctagcaggcaggctactggggcagaaggccgagagctgccgcaatgcc
ttcatcgtcctctgcattgagaacagcctcatgaccgccacctcctag
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