Loxodonta africana (African savanna elephant): 100664701
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Entry
100664701 CDS
T04351
Symbol
DHX16
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100664701 (DHX16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lav03041
]
100664701 (DHX16)
Enzymes [BR:
lav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100664701 (DHX16)
Spliceosome [BR:
lav03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100664701 (DHX16)
Complex C
U4/U6.U5 tri-SnRNP related factors
100664701 (DHX16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
SRP54
Motif
Other DBs
NCBI-GeneID:
100664701
NCBI-ProteinID:
XP_003422502
UniProt:
G3U6B2
LinkDB
All DBs
Position
Unknown
AA seq
1044 aa
AA seq
DB search
MATPAGLERWVQDELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLSGPAR
DFALRLWNKVPRKAVVEKPARAAEREARALLEKNRSYKLLEDSEDSSEETVGRAGSSLQK
KRKKRKHLRKKCQEDEEEEEEVISEKEKRKTGGSKQQTEKPESEDEWERTERERLQDLEE
RDAFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAK
REREKLEDLEAELADEEYLFGDVELSRHERRELKYKRRVRDLAREYRAAGEQEKLEATNR
YHMPEETRGQPARAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVL
EEEETIEFVRATQLQGDEEPLAPPPQTQAQQKESIQAVRQSLPVFPFREELLAAIANHQV
LIIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEV
GYSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIK
DVARFRPELKVLVASATLDTARFSAFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVV
SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA
RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA
SANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMH
FDFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCS
EEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQW
CYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRS
GYRTVKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYK
AKELEDPHAKKMPKKIGKTREELG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggccgggctggagcgctgggtgcaagacgagctgcactcggtactgggg
ctcagcgagcggcacgtagcccagttcctgatcggcaccgctcagcgctgcgcttcggcc
gaggagttcgtgcagcgtctgcgagacaccgacaccttggacctcagtggcccggcccgg
gatttcgccctgagactctggaacaaggtaccacggaaggcagtggtagaaaagccagct
cgggcagctgagcgagaggcccgagccctgctggaaaagaaccgatcttataagttgctg
gaagacagtgaggatagcagtgaggagactgtgggtagggctgggagcagcctccagaag
aagcgtaagaaacggaaacacctcaggaagaaatgccaggaggacgaggaagaagaggag
gaagtgatctctgagaaagaaaagagaaagacgggggggagtaaacagcagacggagaag
ccagagtcagaggatgaatgggagcggacagagcgcgagcgccttcaggacctggaggaa
cgtgatgcctttgctgagcgcgttcggcagcgggacaaggatcggactcgcaatgtccta
gagcggtcagacaagaaggcttatgaagaggctcaaaagcgcctcaagatggctgaggaa
gaccggaaagccatggtccctgagctgcggaagaagtctcgccgggagtacttggccaag
cgggagcgagagaagcttgaggacctggaggcagagctggctgatgaggagtaccttttt
ggggatgtggagctgagccggcatgagcggcgggagctcaaatacaaacggcgtgtgcga
gacctggcccgtgagtaccgggcagctggggaacaggaaaagctagaggctacgaaccgc
taccacatgcctgaggaaactcgaggacagccagcacgagctgtggatctggtggaagag
gaatcgggtgcccccggggaggagcagcggcgctgggaggaggcccggctgggagcagcg
tctctgaagtttggggcccgagatgctgcctcccaggagcccaagtatcagctggtgctg
gaggaggaggagaccatcgagtttgtccgggccactcagctccagggtgatgaggagcca
ttagctccaccccctcagacccaggctcagcagaaggagtccatccaggccgtccgccaa
agcctcccggtatttccattccgtgaggagctcctggctgcaattgccaatcatcaggtc
ctcatcattgaaggcgagacaggctcggggaagactacccaaatcccccagtatctcttt
gaggagggttacacaaagaagggtatgaagattgcctgcacccagccccggagggtggca
gccatgagtgtggcagcccgtgtggcccgggagatgggcgtgaagcttgggaatgaggtt
ggctacagcatccgctttgaggactgcacgtcagagcgaactgttctccgttatatgaca
gatgggatgctgctccgggagttcctctctgagcctgaccttgcaagttacagcgtggtg
atggtggatgaggctcatgaacgaaccctgcacacagacattctttttggattgatcaag
gatgtggctcgcttccgcccagagctcaaggtcctggtagcttctgctacactggacaca
gcccgtttttctgctttctttgatgatgcccctgtcttccgaattcctggacgcagattt
ccagttgacatcttttataccaaggctccagaggctgactacctagaagcctgtgtagtg
tctgtgctgcagatccatgtgacgcagccacctggggacatcctggtgttcctgacagga
caggaggagattgaggctgcctgcgagatgctccaggatcgctgccgccgcctgggctcc
aaaatccgagagcttctggtgctgcccatttatgccaacctgccctctgacatgcaggct
cggatcttccagcctacaccccctggagcacgaaaggtggttgtggcaacgaacatcgct
gagacatctctcaccattgagggcatcatttacgtgctggatccaggattctgtaagcaa
aagagctacaacccccgcacaggcatggagtcgctcactgtcacaccctgcagcaaggcc
tcagccaatcagcgagctggccgggcaggtcgggtggctgcaggaaagtgcttccgcctg
tataccgcctgggcctatcagcatgagctcgaggaaacgacggtgcctgagatccagagg
accagcctgggcaatgttgtgttgttgctcaagagcttagggatccatgacctaatgcac
tttgatttcctggaccctccaccatatgagaccctgcttctggctttggagcagctgtat
gctctgggagccctcaaccaccttggggagcttaccacgtctggtcggaagatggcagag
ctgccagtggaccccatgctatctaaaatgatcttggcttctgagaagtacagctgctca
gaggagatcctgacagttgctgccatgctctctgtcaacaattctatcttctaccggccc
aaggacaaggtcgtccatgctgacaatgcccgtgtcaacttcttcctccctggtggtgac
cacctggttctactcaacgtttacacacagtgggctgagagtggctactcttcccagtgg
tgctatgaaaacttcgtacagttcagatcgatgcgccgagcccgggatgtgcgggaacag
ctagaggggctcttggagcgtgtggaagttggtcttagttcttgccagggggactatatc
cgagtacgcaaggccatcactgctggttacttctaccatactgcacggttgactcgtagc
gggtatcgcacagtgaaacagcagcagacagtgtttattcatcccaactcctccctcttt
gaggaacagccacgctggctgctctaccacgaacttgtcttgaccaccaaggagttcatg
agacaggtactggagattgagagcagttggcttctggaggtggctccccactattataag
gccaaggagctagaagatccccatgctaagaaaatgcccaagaaaataggcaagacacga
gaagaactagggtaa
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integrated database retrieval system
