Loxodonta africana (African savanna elephant): 100666041
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Entry
100666041 CDS
T04351
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03015
mRNA surveillance pathway
lav03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100666041 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100666041 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100666041 (CPSF6)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
100666041 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
100666041
NCBI-ProteinID:
XP_010597028
LinkDB
All DBs
Position
Unknown
AA seq
589 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVK
GTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGS
AIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRS
REKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggaccacatagacatttacgcggatgtgggcgaagagttcaaccag
gaagctgaatatggtgggcatgatcagatagatttgtatgatgatgtcatctctccatct
gcaaataatggagatgccccagaagaccgggattacatggatactctcccaccaactgtt
ggtgatgatgtgggtaaaggagcagcaccaaatgttgtttatacatatactgggaagaga
attgcattatatattggcaatctaacgtggtggacaacagatgaagacttaactgaagca
gttcattctttgggagtaaatgatattttggagataaagttttttgaaaatcgggcaaat
gggcagtcaaaagggtttgccctcgttggtgttggatctgaagcatcctcaaaaaagcta
atggatctgttgcctaaaagagaactacatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcagtccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacccccaccttttccaggaaatttgatcaagcatcttgttaaa
ggaactcggcctttgttcctggaaactaggattccatggcatatggggcacagcatagag
gaaatacccatttttggcctaaaagctggacagactccaccacgtccaccattaggtcct
ccaggcccacctggtccaccaggtcctccacctcctggtcaggttctgcctcctccacta
gctgggcctcctaatcgaggagatcgccctccaccgccagttctttttcctggacaacct
tttgggcagcctccattgggtccgcttcctcctggccctccacctccagttccaggctac
ggcccccctcctggcccaccacctccacaacagggaccacctccacctccaggccccttt
ccacctcgcccacctggccctcttgggccacccctgacacttgctcctcctccgcatctt
cctggaccacctccaggtgccccgccaccagctccacatgtgaacccagctttctttcct
ccaccaactaacagcggcatgcctacatcggatagccggggtccaccaccaacggaccca
tatggccgacccccaccatatgataggggtgactatgggccccctggaagagaaatggat
actgcaagaacgccattgagtgaagctgagtttgaagaaatcatgaatagaaatagggca
atctcaagcagtgccatttcaagagctgtgtctgatgccagtgctggtgattatgggagt
gctattgagacattggtaactgcaatttccttaattaaacaatccaaagtatctgctgat
gatcgttgcaaagtcctgattagctctttgcaagattgccttcatggaattgagtctaag
tcttacggttctggatcaagaagacgtgaacgatcgagagagagggaccatagtagatca
cgagaaaagagtcgacgtcataaatcccgtagtagagatcgtcatgatgattattataga
gagaggagcagagaacgagagagacaccgggatcgtgaccgagaccgtgaccgcgagcgg
gacagagagcgcgagtatcgtcatcgttag
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