Loxodonta africana (African savanna elephant): 100667342
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Entry
100667342 CDS
T04351
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X2
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04140
Autophagy - animal
lav04142
Lysosome biogenesis
lav04148
Efferocytosis
lav05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
100667342 (VPS39)
04140 Autophagy - animal
100667342 (VPS39)
04148 Efferocytosis
100667342 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100667342 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lav04131
]
100667342 (VPS39)
Membrane trafficking [BR:
lav04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100667342 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
LIF1_N
Beta-prop_RIG_2nd
VPS18_solenoid_2nd
DUF4145
Beta-prop_WDR36-Utp21_1st
KCTD11_21_C
Lgl_C
SAM_CEP-1_C
Motif
Other DBs
NCBI-GeneID:
100667342
NCBI-ProteinID:
XP_003418721
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDAGCNRFEVTLEKSNK
NFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGE
EVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVD
GKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFVTSGGSNIIYVASNHFVWRLIPVPM
ATQIQQLLQDKQFELALQLAEMKEDSDSEKQQQIHHIKNLYAFNLFCQKRFDESMQVFAK
LGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEE
SEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENL
DLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLTENFKGLAIPYLEHIIHVW
EETGSRFHNCLIRLYCEKVQGLMKEYLLSFPAGQTPVPAGEEEGELGEYRQKLLMFLEIS
SYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHKYYDQNK
DGNKDVYLSLLRMYLSPPSVHCLGPIKLELLEPQANLQAALQVLQLHHSKLDTTKALNLL
PANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCRKKIGNSAFARYPNGVVVHYFCSKEVNPADT
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgttcgagccggtgccgatcctagaaaagctgcctctgcagatcgactgt
ctcgccgcctgggaggaatggcttcttgttggaaccaagcaaggacatcttcttctctat
aggattcggaaggacgctggttgcaacaggtttgaagtgacactagagaaatccaataag
aatttctccaaaaagatccagcagatccatgtggtttcccagtttaagattctggtcagc
ttgttagaaaataacatttacgtccatgacctattgacatttcaacaaattactacggtg
tcaaaggcaaagggagcatcactgttcacctgtgacctccagcacacagagactggtgag
gaggtgttgcggatgtgtgtggcggtgaaaaagaagctgcagctctatttctggaaggac
agagaatttcatgaattgcagggggacttcagtgtaccagacgtgcccaagtctatggcg
tggtgtgaaaactctatctgtgtgggcttcaagagagactactacctaataagggtggat
ggaaaagggtctatcaaagagctcttcccaacaggaaaacagctggagcccttagttgca
cctctggctgatggaaaagtggccgtgggtcaggatgatcttaccgtggtgctcaatgag
gagggcatctgcacacagaagtgtgccctgaactggacggacataccggttgccatggag
caccagcctccctacatcattgcggtgttgcctcgatatgtagagatccggacgtttgag
ccgaggcttctggtccagagcattgaattgcagaggcctcgttttgttacctcaggagga
tcaaacattatctacgtggccagcaatcattttgtttggagactcattcctgttcccatg
gcaacccaaatccagcagcttctccaggacaagcagtttgaattggctctgcagctggca
gaaatgaaagaggattctgacagtgaaaagcagcagcagatccatcacatcaagaacttg
tatgccttcaacctcttctgccagaagcgcttcgatgagtccatgcaggtgtttgctaag
cttggcacagaccccacccatgtgatgggcctgtaccccgacctgctgcccaccgactac
agaaagcagctgcagtatcctaacccactgcctgtgctctccggggctgagctggagaag
gctcacttagctctgattgactacctgacacagaaacgaagtcagttggtgaagaagctg
aacgactccgaccaccagtccagcacctccccgctcatggaaggcacacccaccatcaag
tccaggaagaagctgttgcagattattgacaccaccttgctgaagtgctacctccacacg
aacgtggccctggtggcccccttgctgcgtctggagaacaaccactgtcacatagaagag
agcgagcatgtgctgaagaaggcacacaaatacagtgaactgataatcctatatgagaag
aaggggcttcacgagaaagctctgcaggtgctggtagaccagtccaagaaagccaactcc
cccttgaaaggccatgagaggacagtgcagtacctgcagcacctgggcacagaaaacctg
gatttgattttttcctactcagtgtgggtgctgagagacttcccagaagatggcctgaag
atatttactgaagaccttccagaagttgagtctctgccacgagatcgcgtgcttggtttc
ttaacagagaattttaaaggcctggctattccgtacctggaacacatcatccacgtttgg
gaggagacaggctctcggttccacaactgcttgatccggctgtactgtgagaaggtgcaa
ggtctgatgaaggagtatctcctgtccttccccgcaggccagactccggtccctgctgga
gaggaggagggagagctgggagaataccggcagaagctccttatgttcttggagatttcc
agctactacgatccaggccggctcatctgtgattttcctttcgatggcctcttggaagag
cgagctctccttttggggcgcatgggcaagcatgagcaagccctcttcatctacgtccac
atcctgaaggataccaggatggctgaggagtactgccacaagtattatgaccaaaacaaa
gatggcaacaaagatgtgtacctgtccctgctccggatgtacctgtcaccccccagtgtt
cactgcctggggccgatcaagctggagctgctggagccgcaggccaacctccaggctgcc
ctgcaggtcctccagttgcaccacagcaagctggacaccaccaaggccctcaaccttctg
ccagcaaacactcagatcaatgatatacgcatctttctggaaaaggtcttagaagaaaat
gcacaaaagaaacggttcaatcaagtgctcaagaacctcctccatgcagagttcctgagg
gtccaggaagagcggattttacaccagcaggtgaagtgcatcatcacagaggagaaggtg
tgcatggtgtgcaggaagaagatagggaacagcgcatttgcgagatacccgaatggagtg
gtcgtgcactacttctgttccaaagaggtgaacccagctgacacctga
DBGET
integrated database retrieval system
