Loxodonta africana (African savanna elephant): 100667452
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Entry
100667452 CDS
T04351
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W isoform X2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100667452 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100667452 (SKIV2L)
Enzymes [BR:
lav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100667452 (SKIV2L)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100667452 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
100667452 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
100667452
NCBI-ProteinID:
XP_003422307
UniProt:
G3TCU8
LinkDB
All DBs
Position
Unknown
AA seq
1246 aa
AA seq
DB search
MLETERLVLPPLGPLDLPLRAVELGCTGRWELLNVPGAPESTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLSAPGAPVPSDLQAQRHSTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPLSQALWGNPTQYPFWPGGMDEPTITDLSIREEAEEDIDFE
KDLLTVPPGFKKGMDFAPKNDLVPALGLLSLSRLLEPLDLGGGDEDETEAVGRPGDTRGD
SVSVSPCSAPLVRANSLEDLVLKEASTAVSSPEVPKPPPQEQWAIPVDVTSPVEDFYRLI
PQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVIST
VARPVPLEHYLFTGNSSKTQGELFLLLDSRGTFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHHGGPAQDRGVYLSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLQRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDTMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AQEQSLVELTKRLEALEEPDVTGQLVDLPEYYSWGEELTETRSLIQRRIMESVNGLKSLS
AGRVVVVKNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPMSEDPRDKGPATRDVPFPDD
LVGFKLFLPEGPCDHVVAKLQPGDVAAITTKVLRVNGEKILEDFNKRQQPKFKKDPPFAA
VTTAVQELLRLAQAYPAGPLTLDPVNDLQLKDVSVVEGGLRARKLEELIQGAQCVHSPRF
PAQYLKLRERVQIQKEIERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRV
ACAMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSSGDPGDQLPSTLKQGVERVRA
VAKRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgttggagactgagcgactcgtgttacctcccctaggtcccctggacctgccccttcgg
gccgtggagctgggatgcaccgggcgatgggagctactaaacgtgcctggggctccagag
agcacccttccccatgggctccctccctgtgccccagatctgcagcaagaagcagagcag
ttgtttctgtcatccccggcctggctgcctctgcatggtgtggagcactcagcccggaaa
tggcagaggaagacagatccctggtctctcctgtcagccccaggggccccagtcccctcc
gacctacaagcccaaagacactcaaccacaggccagattctgggctacaaagaggtcctg
ctggagaacacaaacctatcggccacaacctctttgtctcttcgccggccaccagggccc
ctctcacaggccctgtgggggaatccgacacagtatcctttttggccaggtggaatggat
gagcccacaataacagatctgagcattcgggaggaggctgaggaggatatagactttgag
aaagacctccttactgttccacctggcttcaagaaaggcatggactttgcaccaaagaat
gacctagttccagctcttgggttgctcagcctcagccgtctgttggagcccctggatttg
ggtgggggtgatgaggatgagactgaagcagtgggacggccaggagataccaggggggac
agtgtttcagtgtctccctgcagtgctcccctagtccgagcgaacagcttagaggacttg
gtgttgaaggaagcatccacagctgtatcctccccagaggtacccaagcccccacctcag
gagcagtgggccattcctgtggacgtcacctcccctgttgaggatttctaccgcctcatt
cctcagccagccttccagtgggcatttgagccggatgtgtttcagaaacaggccatcctg
cacttggaacggcatgactcagtctttgtcgcagctcacacatctgcggggaagacagtg
gtggctgaatatgccattgctctagcccagaaacacatgacacgcaccatctacacttca
cctatcaaagccctgagcaaccagaagttccgagacttccggaatacgtttggggatgtg
gggctgctcactggggacgtgcagctgcacccggaagcctcctgcctcatcatgaccaca
gagatccttcgctccatgctgtacagtggctcagatgtcatccgggacctggagtgggtc
atctttgatgaagtccactatatcaacgatgccgaacgtggtgttgtatgggaggaagtg
cttatcatgctccctgatcatgtctccatcatcctgctgagcgccactgtccccaatgcc
ctggaatttgctgactggattgggcgactgaagcgtcgccagatctatgtgatcagcact
gtcgcccgccctgtccctctggagcattacctcttcacagggaacagctccaagacccag
ggggagctcttcctgctgctggactcccgaggcaccttccacacaaaggggtactacgca
gcagtggaggccaagaaggagaggatgagcaagcacgcccagacctttggggccaagcag
cctacacaccacgggggacctgcccaggatcgtggtgtgtacctgtccctcctggcctcc
ctccgtgctcgtgcccagttgcctgtggtggtgttcaccttctcccggggacgctgtgac
gaacaggcctcaggccttacctctcttgacctcactacgagttcagagaagagtgagatt
cacctcttcctgcagcgctgcctcgcccgcctccgcggctctgaccgccagctgccccag
gtcttgcacatgtcggagctcctgcagcgtggcctgggcgtgcaccacagcggcatcctg
cccatcctcaaggagatcgtggagatgctcttcagccgcggcctggtcaaggtcttgttt
gccacagagaccttcgccatgggtgtaaacatgccggcccgaacagtggtgtttgacacc
atgcgcaagcatgatggctccaccttccgggacctgctccctggggagtatgtgcagatg
gcaggccgggctgggcggcggggcctggaccccacgggcactgtcatcctgctctgcaag
ggccgcgtgcctgagatggcagacctgcaccgcatgatgatggggaagccatcccagctg
cagtcccagttccgtctcacgtacaccatgatcctcaacctgctgcgcgtggatgccctc
agggtggaggacatgatgaaaaggagcttctctgagtttccatcccgcaaggacagcaag
gcccaagaacaatctctggttgaactgactaagaggctggaggccttggaggagcctgat
gtgactggccaactggttgacctgcccgagtattacagctggggggaggaactgacagag
acccgcagcctaatccagcggcgcatcatggagtctgtgaatgggctaaagtctctctca
gctggaagggtggtggtcgtgaagaatcaggagcatcacaacgccttgggggtgatcctg
caggtctcctcgaactccaccagcagagtattcacaaccctggtcttgtgtgataaaccc
atgtctgaagacccgcgggacaaggggccagccacccgagacgtgccctttccagatgac
ctggtgggattcaagctgttcctgcctgaagggccttgtgaccatgtcgtggccaagctc
cagccaggagacgtggctgccatcaccactaaggtgctccgggtgaacggggagaagatc
ttggaagacttcaataagaggcagcaaccaaaattcaagaaggatcctccttttgcggct
gtgaccactgctgtccaggaactcctgcgcctggctcaagcctacccggcgggacccctc
acccttgaccctgtcaatgacttgcagctcaaggatgtgtcagtggtggagggtggtctc
cgggcccgcaagctggaggagctgatccagggggctcagtgtgtgcacagcccccgtttc
cctgcccagtacctgaagctacgtgagagagtgcagatacagaaggagatagagcggctc
cgcttcctactgtcagaccagtcactgctgctgctcccggagtaccaccagcgagtagag
gtgctccggaccctgggctatgtggacgaggcaggcactgtgaagctggcagggcgggtg
gcttgtgccatgagcagccacgagttgctgctcactgaactcatgtttgacaatgcactg
agcactctgcggcctgaggagattgcggccctactttcaggcctggtctgccagagttct
ggggaccctggggatcagctcccaagcaccctcaagcagggagtggagcgggtccgggct
gtggctaagcggattggcgaggtccaggtggcctgtggcctgaaccagacggtggaggaa
tttgtcggggagctgaactttgggctggtcgaggttgtgtacgagtgggcccggggcatg
cccttctccgagttggcagggctctccgggacccccgagggcctggtggtccgctgcatc
cagcgcctggctgagatgtgtcgctcgctgcggggggcagcccgcctggtaggtgagcct
gtgctaggtgccaagatggagacagcagctacactgctacggcgggacattgtctttgca
gccagtctgtacacccagtga
DBGET
integrated database retrieval system
