Loxodonta africana (African savanna elephant): 100667893
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Entry
100667893 CDS
T04351
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04151
PI3K-Akt signaling pathway
lav04382
Cornified envelope formation
lav04510
Focal adhesion
lav04512
ECM-receptor interaction
lav04820
Cytoskeleton in muscle cells
lav04926
Relaxin signaling pathway
lav04933
AGE-RAGE signaling pathway in diabetic complications
lav04974
Protein digestion and absorption
lav05146
Amoebiasis
lav05165
Human papillomavirus infection
lav05200
Pathways in cancer
lav05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100667893
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100667893
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100667893
09142 Cell motility
04820 Cytoskeleton in muscle cells
100667893
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
100667893
09154 Digestive system
04974 Protein digestion and absorption
100667893
09158 Development and regeneration
04382 Cornified envelope formation
100667893
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100667893
09162 Cancer: specific types
05222 Small cell lung cancer
100667893
09172 Infectious disease: viral
05165 Human papillomavirus infection
100667893
09174 Infectious disease: parasitic
05146 Amoebiasis
100667893
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100667893
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lav04147
]
100667893
00536 Glycosaminoglycan binding proteins [BR:
lav00536
]
100667893
Exosome [BR:
lav04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100667893
Glycosaminoglycan binding proteins [BR:
lav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100667893
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100667893
NCBI-ProteinID:
XP_010593035
LinkDB
All DBs
Position
Unknown
AA seq
1686 aa
AA seq
DB search
MASATPSCPHPPTEQSPPPQQLGRPGPIGIQGPTGPQGFAGPIGLSGLKGERGSPGSLGP
YGPKGDKGSMGVPGFLGINGIPGHPGHPGPRGPPGLDGCNGTEGAAGFPGHDGYPGLLGP
PGIPGQKGTKGDPVIAHGTLKGMKGDPGLPGLDGSAGPEGAPGSPGVTGPTGYLGLQGPP
GPPGLPGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPQ
GFPGVVGPPGIPVIGTTASTGEKGEKGISGLPGPRGPIGSEGVQGPPGSQGKKGSSGLPG
FSGFPGIKGNKGGIGLPGPDVFIDTEGAVISGYPGDPGVPGSRVLKETKAFQGLPGPSGT
PGLPPISPGAPGSLGSQGVPGLKGDRGDPGHTTVGATGLPGRIGLPGLPGPPGPPGPPGP
SFETEPLKNAEAGYPGLRGERGPKGNPGLKGVKGDSGFCACDGGVPNTGPPGEPGLPGPP
GLMGLPGRKGIRGDTGSEGAEGPAGSPGLFGPPGPAGPKGEKGEPTQSTRPGMPGEQGDD
GPQGHPGETGVPGKDGVPGLPGLPGPLGDAGQGFPGEKGFAGLPGRKGQHGLTGLPGIGL
PGSPGPRGLPGDKGIDGLPGQQGLPGPPGDCCCREKVGKGVIDTEGGITLPCIITGLYGP
SGLPGAPGVPGPKGIRGYPGTPGQPGVRGAKGEPGSAGLVRLPELPGFPGPRGEKGLPGF
PGLPGKDGLPGNVGSPGLPGPKGAPGDIFGAENGAPGEQGLQGLPGDRGFPGDSGFPGPK
GLLGKSGMLGAKGERGSPGAPGHTGKPGPRGPGGLSGIKGKPGLPGTVGFPGLAGRPGKK
GSRGEAGHPGSTGKRGLPGLKGLPGSAGLIGFLGSSGLPGATGLPGLPGPKGEKGSVGLI
GFPGIPGLPGIPGASGLKGIPGSPGRIGTSGPAGSPGEKGDRGNPGPVGIPGPRLPMLNL
WFKGDKGSRGSAGSDGFPGPRGDKGEAGRPGPTGLPGVPGLASSIKGLVGRPGPSGSLGL
RGLPGLKGAPGITGFPGMPGETGIRGLNGAPGLPGVAGLPGSKGDPGQSLEIPGTPGPKG
QPGERGFKGIKGKDGPIGDVGFPGNKGEDGKDGVPGDIGLPGSPGFPGIAGLRGDPGLPG
SPGHAGVTGPLGHPGLVGPKGFPGLSGLHGLNGLPGTKGAHGTPGPSITGVPGPAGLPGP
KGEKGSPGIGIGAPGKPGVRGQKGGRGFPGVQGPAGLPGAPGISLPSVIAGQPGDPGRPG
LDGERGRPGSPGPRGPPGPSSDQGDSGNPGFPGIPGPQGPKGDQGIPGFSGPPGELGLKG
MRGEPGVMGTPGKVGPPGDPGLPGMKGKAGPGGFSGPRGVPGQTPIAEAIQVPPGPLGLP
GIDGIPGLVGDPGVQGPVGRQGSKGLPGISGKDGRSGLPGPPGVLGDPGVPGLQGPPGFE
GAPGKQGPFGRPGMPGQTVNVGYTLVKHSQSEQVPLCPVGMSQLWVGYSLLFVEGQEKAH
NQDLGFAGSCLPRFSTMPFIYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQTQIPRYI
SRCSVCEAPSQAIAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCL
EDFRATPFIECSGARGTCHYFANKYSFWLTTVEERQQFGEEPVSETLKAGQLHTRVSRCQ
VCMKSL
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcaaccccctcctgccctcatcctcccaccgagcagtcccctcctccccaa
cagctggggcgacctggaccgattggaattcaaggtccaacaggccctcaaggatttgct
ggccctattggtttatcagggttgaaaggagaaaggggctccccgggctctctgggacca
tatggacccaaaggagacaagggttccatgggagttcctggctttcttggcatcaatggg
attccgggccaccctggacatccagggcccagaggcccacctggtctggatggctgtaat
ggaactgaaggagctgctggatttccaggccatgatggataccctgggcttctcggacca
cctggtatccctggtcagaaagggactaaaggtgatccggttattgcccacggtactctt
aaaggaatgaagggggatcctgggctgcctggactggatggaagtgctggtccagaagga
gcacccggctctccaggagttacaggacccacaggatacctaggccttcaaggtcctcca
ggtcccccgggtctccctggtcctgatgggaatatggggttaggtttccaaggagagaaa
ggagtcaagggtgatgtgggcctccccggacctgcgggaccaccaccatctacgggagag
ctggaatttatgggatttccaaaagggaaaaaaggatccaaaggtgaaccagggccccag
ggtttcccaggtgtagttggtcctccaggcatcccggtaataggaaccacagcctctacc
ggagaaaaaggagaaaagggaatctctggtttgccaggacctaggggtcccataggttca
gaaggagtccaaggccctccaggaagtcagggcaagaaggggtcctctggtttacctggg
ttcagtggattcccgggaattaagggtaacaaaggtggcattggactgccaggtccagat
gttttcattgatacagaaggagctgtaatctcaggttatcctggagaccctggtgtacca
ggctcccgggtcttaaaggagacgaaggctttccagggcctacctggcccttctggcacc
cctggcctcccaccaatctcaccaggtgccccaggctccctgggctctcagggtgttcca
ggcctgaagggggaccgaggagacccaggccataccacagttggggcaactggtctccca
ggcagaattgggttaccaggcctaccaggcccaccaggcccaccaggcccacctggtcca
tcatttgagactgagcccctaaagaatgctgaggcagggtaccctggcctcagaggagaa
agaggcccgaaaggaaacccaggcctcaaaggagtaaaaggggactccggtttttgtgct
tgtgatggtggcgtccccaacactggaccacctggggaaccaggcctgcctgggccacca
ggtctcatgggtcttccaggccgcaaaggaatccgaggagatacaggctctgagggtgca
gagggcccagctgggtctccaggtttatttgggcctccaggtcctgcaggccccaaagga
gagaagggagaaccaactcaaagtacaagaccagggatgccaggagagcagggtgatgat
ggtccccaggggcaccctggtgagacaggagtcccaggcaaggacggagtaccaggttta
ccaggtctgccaggccctctgggtgatgccggacagggctttcctggagaaaaagggttc
gcaggacttcctggtagaaaaggccagcatggtctaactggcctcccaggaattgggctg
ccaggatctcctggacctcgtgggcttccaggagacaaaggaatagatggattaccagga
caacaaggtcttcctgggcctccaggtgactgctgctgcagggagaaggttggtaaagga
gtcatagacacagagggaggaatcacgttgccatgtattattactggcttatacggtcca
tcaggcctcccaggagctcccggagtcccaggccctaaaggaatccgtggctaccctggg
actccaggccagcctggagtacgtggagctaaaggagagcctggaagtgctggattagtt
cgtctccctgaattgccaggatttcctggacctcgtggggagaagggcttgcctgggttt
cctgggctccctggaaaagatggcttgcctgggaacgttggcagtccaggtttaccaggt
cccaagggagcccctggtgacatctttggtgctgaaaatggtgctccaggagagcaaggc
ctccaaggattgccaggggacagaggatttcctggagactctggctttccaggacccaag
ggtttgcttgggaagtctggcatgctgggcgccaaaggtgagcggggcagccctggagca
ccgggacacacgggaaagccaggcccccgagggccaggtggcctgtctggcatcaaggga
aaacctggtctcccgggaacagtgggctttccaggcttggcaggacgtcctggaaagaaa
ggctcgagaggtgaggcaggtcacccaggatcaactggaaagagaggtctgcctgggctc
aaaggccttcctggatctgcaggcctaataggcttcctggggagctcaggcttgccaggg
gccacagggttgccaggtctcccaggcccaaagggtgagaaggggtccgttggactgata
ggttttccagggataccaggtctccctggtattcctggtgcaagtggattaaagggaatt
cctgggtcaccaggaagaatcggaacatctggacctgctggtagccctggtgaaaaagga
gacagaggcaacccagggccagtcggaatacctggcccaagactcccaatgctgaatctt
tggttcaaaggagacaaaggctcccggggctcagctggatcagacggatttccagggccc
agaggtgacaaaggagaggctggccgccctgggccaacaggcctccctggagttcctggg
cttgccagctctatcaaaggacttgttggaaggccaggcccctctggctccttgggacta
cggggcttgcctggcctgaagggagcccctgggatcacaggcttcccaggaatgcctgga
gaaactggtatacggggtcttaatggagctccagggctcccaggagtagctggtctccca
ggttctaaaggagatccaggccagtcacttgaaattcctggtaccccaggacccaaggga
caacctggggagcgtggttttaaaggtatcaaaggaaaagatggcccaattggtgatgtg
ggtttcccaggaaataaaggtgaagatggaaaagatggagttcctggagacattggcctt
cctggctctccaggattccctgggattgcaggactgagaggagacccagggcttccaggt
tctcctggtcatgcaggggtaactggaccgctgggacaccctggcctagtaggacctaaa
ggcttccctggactttctggcttacatggattaaatgggcttccaggaactaagggtgcc
cacggcactccaggacccagtataaccggtgtgcctgggcctgctggcctgcctggcccc
aaaggggaaaaaggctctccaggaattggcattggagccccagggaaaccaggtgtgaga
ggacaaaaaggtggccgaggttttccaggtgtccaaggccctgctggtctccctggtgcc
ccaggcatctccttgccctcagtcatagcaggacagcctggtgaccccgggcgaccaggc
ctagatggagaacgaggccgcccaggctctcctgggccccggggtccccctgggccatcc
tcggatcaaggcgactctggaaaccctggcttccctggaattcctggccctcaagggccc
aagggagaccaaggaatcccaggtttctctggtccccctggagagctaggactgaaaggc
atgagaggtgagcctggcgtcatggggactccaggcaaggttgggccacctggagaccca
ggacttcccgggatgaaggggaaggcagggccaggaggcttttctggcccccgaggtgtt
cctgggcaaacaccaatcgcagaagccatccaggttccccctggacctttgggtctacca
ggcatcgatggcatccctggccttgtgggggaccctggggttcaaggtcctgtaggccga
caaggttccaaaggtttacctggcatctctggcaaagatggccgcagtgggctcccaggc
ccacctggggttcttggtgatcctggtgtccctggactgcaaggccctccaggatttgaa
ggagctccagggaagcagggcccctttgggaggcctggaatgcctggccagaccgtgaac
gtgggctacaccttggtgaagcacagccagtcggagcaggtgcccctgtgccctgtcggg
atgagccagctgtgggtgggttacagcttgctgttcgtggaggggcaggagaaagcccac
aaccaggacctggggtttgctggttcctgcctgccccgcttcagcaccatgcccttcatc
tactgcaacatcaatgaagtgtgccactatgccaggcgcaatgataaatcttattggctc
tccaccactgcccctatccctatgatgcccgtcggccagacccagattccccggtacatc
agccgctgctctgtgtgtgaggcaccctcgcaagccattgctgtgcacagccaggatatc
accatcccacagtgccccctgggctggcgcagcctctggatcggatactccttcctcatg
cacactgctgctggggccgagggtggaggccagtccctggtctcacctggctcctgccta
gaggactttcgggccactcctttcatcgagtgcagtggtgcccggggcacttgtcactac
tttgccaacaaatacagcttctggctgacgacagtggaggagaggcagcagtttggggag
gaacctgtgtctgaaacactgaaagccggacagctccatactcgggtcagccgctgccag
gtgtgtatgaaaagtctgtaa
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