Loxodonta africana (African savanna elephant): 100668171
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Entry
100668171 CDS
T04351
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
lav
Loxodonta africana (African savanna elephant)
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lav03000
]
100668171 (RC3H1)
04121 Ubiquitin system [BR:
lav04121
]
100668171 (RC3H1)
Transcription factors [BR:
lav03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
100668171 (RC3H1)
Ubiquitin system [BR:
lav04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
100668171 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
100668171
NCBI-ProteinID:
XP_010589412
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKTPASFAQSVQELTIALQRTGDPANLNRLRPHLELLAN
IDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCRDM
KQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGHLNEVGLPSAAILPDEGA
VDLPSRKPPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLLES
VPKNISALPVNPHPVPPRGPTDLPPMPVTKPLQMVPRGSQLYPTQQADVYYQDPRGAAPP
FEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQQY
PPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQIESYYPVA
PHPSQIRPSYLREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPTFHQEEFLDEDLKIAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VDSKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMAPQ
GAPTKSINISDYSPYGTHGGWGSSPYSPHQNIPSQGHFSERERMSLSEVTSHGKPLPSAE
REQLRLELQQLNHQINQQTQLRGLEAVSNRLVLQREANTLAGQPQPPQPPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSLDVKSKLNTSKQAENGQPEPQSKVPAEDLTLTF
SDVPNGSALTQENISSVNRPVP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgagctcctccctgtgaactcagcgttgctgcagctagtgggtgctcaggttcctgag
cagcagcctattactttgtgtagtggggtcgaagatacaaagcattatgaggaagcaaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctaagccgcccaatgcagaggaagctggtgactctg
gttcactgccaactagtggaagaagaaggcaggattcgtgccatgagggcagctcgatca
ttaggtgaacgaacagttacagagcttatcctccagcaccagaatcctcagcaactttct
tccaatctttgggcagcagtcagggctagaggctgccagttccttggaccagcaatgcag
gaagaagctctaaagttggttcttttggccttagaagatggatctgctttgtcaagaaaa
gtcttggttctctttgtggtgcaaagattggaaccacggttccctcaggcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttctttaatgcagctgaaagaagaatttagaacctatgaggccctgcgg
cgagaacatgactcccagatagtgcagattgctatggaggcaggtttacgaattgcacca
gaccagtggtcctctttgctttatggagaccagtcgcacaaatcccatatgcagtccatt
attgacaagaccccagcatcttttgcacaaagtgttcaggaactaacaattgctctccag
cggactggagacccagcgaacttaaaccgactaagaccccatttggagctgttagcaaac
attgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatgggctggtt
gctgtgcgtacggtggtacatggactggtggattatatccagaaccacagcaaaaaggga
gccgatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcgagatatg
aagcagagaggtggatgccctcgcggggccagctgtacatttgcacactctcaggaggaa
cttgaaaaatttcgtaaaatgaacaaacgcttagttcccagaagacccctgagtgcctct
ttgggtcatcttaatgaggttggcctgccttcagcagctatccttccagatgaaggtgca
gtggatctgcctagcagaaaaccccctgctctgccaaatggaattgtatcagcagggaac
accgtcacacagctaattccacgagggacagaccccagctacgattctagtctgaagcca
ggaaagatagatcatctgagcagtagtgcccctggatcccctcctgacctactggaatct
gtccctaagaatatttctgccttacctgtgaatccacatcctgtacctccaagggggcca
acagacctgcctcccatgcctgtcaccaaaccacttcagatggtaccacgaggttctcag
ttatatccaacacaacaggcagatgtttattatcaggatcctcggggagctgctccacca
tttgaaccagcaccttatcagcagggtatgtactatactccaccaccacagtgtgtgtcc
cgctttgtccggcctccaccatctgctcctgaacctggccctccatacttggatcattat
ccaccttacctccaagatcgtgtagtaaattcccagtatggcacacagccacagcagtac
ccacccatgtacccacctcactacgatggccgtcgggtatacccagctcagtcttatacg
agagaggagatatttcgagaaagccctatacccattgagattccacctgcagcagtacca
tcctatgttccagaatccagagaaagataccagcagattgagagttactatccagtggct
cctcatccatctcagatcagaccttcatacctcagagagcctccttatagccgtcttcca
cctcctccccagccccatcctagtttagatgagctacatcgcagaagaaaggaaataatg
gcccaactggaggaaagaaaggtcatctctccacctccttttgcaccttcaccaacattg
cctcctaccttccatcaagaggaatttttggatgaagacttgaagatagctgggaaatac
aaaggaaatgattatagccagtactctccctggtcgtgtgacaccataggctcctacatt
gggaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtagaaatgatgaat
gtagacagtaaaggaatgagagaccaacgattggatcttcagagaagagcagcagaaacc
agtgatgatgatctcatcccatttggagatcgaccaacagtatctcggtttggtgccatc
tctcgaacttcgaaaacaatatatcagggtgctggcccaatgcaggctatggcacctcag
ggagctcctacaaagtctattaacatttcagattatagtccatatggcacccatggtggc
tggggaagttccccatattcacctcatcagaacataccttctcagggacacttcagtgag
cgggaaagaatgtccctatcagaagtgaccagtcatggaaaaccccttccatctgctgag
agggaacagctacgactagaattacagcaattgaaccatcagattaaccaacagacccag
ctacgtggactagaggctgttagtaacaggctggtgttgcagagggaggcgaacaccctg
gcaggccagccacagcctccacaaccacctccaaaatggcctggaatgatctcaagtgaa
cagttgagcttggaactgcaccaggtggaaagggaaattggaaagagaacccgggagctg
agtatggagaaccagtgttccctggacgtgaaaagcaaattaaataccagtaaacaagca
gaaaatggacagccagaaccacaaagcaaggttccagctgaggaccttacattgacattc
agtgatgtaccgaatggatcagccctgacacaagagaatatcagctctgtcaacagacca
gttccctga
DBGET
integrated database retrieval system
