Loxodonta africana (African savanna elephant): 100669300
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Entry
100669300 CDS
T04351
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100669300 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lav03041
]
100669300 (DDX42)
Enzymes [BR:
lav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100669300 (DDX42)
Spliceosome [BR:
lav03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100669300 (DDX42)
Complex B
100669300 (DDX42)
Complex C
U2 SnRNP specific factors
100669300 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
100669300
NCBI-ProteinID:
XP_003414374
UniProt:
G3UBX4
LinkDB
All DBs
Position
Unknown
AA seq
934 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATGSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGSNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTSSAQQGHSSPDSPLTSAAKSIPGFGNTGNISSAPVTY
PTAGAQGVNNTAPGSNSREGTGGGNGKRERYTDNRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGYRYPESSRHADGHRHGENRHGGSGGRHGESRGPNDGRNGESRKEGCNRESKMDPKG
DSSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggtccaggcacgaagaggggatttggctttggaggttttgcc
attagtgctggaaagaaggaagaacccaaactcccacagcaatcccacagtgcctttggg
gcaactggctcttcttcaggatttggaaagtcggctccacctcagctcccttctttctac
aaaattggatctaagcgggccaactttgatgaagaaaacgcatattttgaagatgaggaa
gaagattctagcaacgttgatttgccttacattcctgctgaaaactcacctacccgccag
cagttccattcgaagccagcagattctgacagtgatgatgaccccttggaggcattcatg
gctgaagtggaggatcaggcggctagggatatgaagaggcttgaagacaaggacaaagaa
agaaaaaacgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagaaaacccaactgctggtgtggttcaggaggaggaggaagataat
ctggagtatgacagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgaccattcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaagagataaccaacctcacgccacagcagttaatagatcttcggcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgcacattttggattt
gatgaacaacttatgcaccagattcggaaatctgagtacacacaacccactccaatacag
tgccagggtgtgcctgtggcgttaagtggtagagacatgattggtattgccaaaacgggc
agtgggaaaactgctgcctttatatggcccatgttgattcatatcatggaccagaaggaa
ttggaaccaggtgatggaccaattgctgtgattgtgtgtcctactagggaactttgccag
cagatacatgcagaatgtaagcggtttgggaaagcgtataaccttcgatcggtggctgtg
tatggaggagggagcatgtgggagcaggccaaggcccttcaggaaggggcggagattgtc
gtgtgcaccccaggccgactgattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtttcttaccttgtatttgatgaagcagatcgaatgtttgacatgggttttgagtaccag
gtgcgatccattgcaagtcatgtccgtcccgacagacagactctgttattcagtgcaact
tttcggaagaagattgaaaagttggccagagacatcctgatcgatcctattcgagtggtg
cagggcgatattggagaggcaaatgaagatgtgacacagattgtggagattctccattct
gggcctagtaaatggaactggcttacccgacgtctggtagagttcacctcttcaggaagt
gtcctcttgttcgttactaaaaaagccaatgctgaagagctagccagtaaccttaagcag
gaaggtcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatcccagttctggtggcaacagatgttgcagcccgt
ggtctggatattccttcaattaagactgtcattaactatgatgtggcacgagacattgat
acccatactcacaggatcggccgcacaggacgagcgggtgagaagggtgtggcctatacc
ttgctgacccccaaggacagcaattttgctggtgaccttgtccggaacttggaaggagcc
aatcagcacgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaaa
tcccgtttcaaaggcggaaaaggcaaaaagctgaacattggtggcggaggcctaggctat
cgggagcgacctggcctgggctcagagaacacggaccgaggaagtaacaacaatgtaatg
agcaattatgaggcctacaagccctccacaggagccatgggggatcggctgacagcaatg
aaagcagctttccagtcacagtacaagagtcacttcgttgctgccagcctaagcaaccag
aaagctgggagctctgctgctggggcaagtggatggactagtgcagggagtttgaattct
gttccaaccagttcagcccaacagggtcacagcagtcctgacagccccctcaccagtgct
gccaaaagcatcccaggctttggcaatactgggaacatcagcagtgccccagtgacctac
ccgactgctggagcccagggagtcaacaacacagctccagggagtaacagccgagaaggg
actgggggaggcaatgggaagagagagagatacactgacaaccggggtggcagccgccat
agtcacggagagagtggcaatcggcatggcgacagcccacgacatggagatggtggtcgc
catggagatggataccgctacccagaaagcagccgtcatgctgatggccatcggcatggg
gagaacaggcatggaggaagtggaggccgacacggggagagccggggtccaaacgatggt
cggaatggtgaaagcaggaaagaaggttgtaatcgtgagagcaagatggaccccaagggg
gacagcagcaagatggacaagatggacagcaagacagataagacagctgatggttttgct
gtccctgagccacccaaacgcaagaaaagtcgatgggacagttag
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integrated database retrieval system
