Loxodonta africana (African savanna elephant): 100669586
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Entry
100669586 CDS
T04351
Symbol
LIG3
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
100669586 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lav03400
]
100669586 (LIG3)
Enzymes [BR:
lav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100669586 (LIG3)
DNA repair and recombination proteins [BR:
lav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
100669586 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100669586
NCBI-ProteinID:
XP_003414592
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MTLAFKTLFPQTLRVLSRKEPCLFRVRHHRPDVRQFSQCSETDLIPGSCLLLRKEPVLSF
QRGSLRPRATCLVFSPGSHVGLCSGSSEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRI
GKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQ
HIADLSSRVASTPKKKAVVQAKLTATGQVTSPAKAASVTNTNPRKFSGFSAKPNNFGEAP
SSRTLKTSLSSSKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIQDFLQKGSAGDGFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEE
SKSFPPAAKSLLTIQEVDEFLLRLSRLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLRNEQEVEKEPGQRRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDTSTGKPLPFGTLGVHKKAAFQEANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKQVKKASDLVDMINRVIREGLEGLVLK
DVKSTYEPGKRHWLKVKKDYLNEGAMADTADLLVLGAFYGQGSKGGMMSIFLMGCYDPGS
QKWCTVTKCSGGHDDATLARLQTELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAA
VWEITGAEFSKSEVHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKERADFTV
VARDDGSSSAGGSSGETEGTSGPAVSSCKVPITSPDKPSASARKAQRKPSNPNSKGGNKL
AAKPSPVKVGEKPTTKPSPVKVGQKRKAPDEAPCQAKVLLDIFTGVRLYLPPSTPDFSRL
RRYFVAFDGDLVQEFDMASATHVLGSGDKNTEAQQVSPEWIWACVRKRRLVAPC
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagaccctcttcccacaaactctccgtgtactcagccgaaaagaa
ccgtgcctattccgagtgcgacatcaccggcctgacgtgagacagttcagccagtgttca
gaaacagatctgattcctgggagctgcctcctcctgagaaaagagcctgttctatcattc
cagcgaggcagtctaagaccacgtgccacctgccttgttttctcgccaggatcgcatgtg
ggactctgtagtggctccagtgagatggctgagcagcggttctgcgtggactatgccaaa
cgtggcacagctggctgcaaaaaatgcaaggaaaagattgtgaagggcgtttgccgaatt
ggcaaagtggtgcccaatcccttttcagagtccgggggtgatatgaaagagtggtaccac
attaaatgcatgtttgagaaactggaacgggcccgggccaccacaaaaaaaatcgaggac
ctcacagagctggaaggctgggaagagctagaagataatgagaaggaacagataacccag
cacattgcagatctgtcttctagggtggcaagcacaccaaagaagaaagctgttgtccag
gctaagttgacagccaccggccaggtgacatctccagcgaaagctgcctctgtaaccaat
accaatccccggaaattctctggcttctcagccaagcccaacaactttggagaagccccc
tcaagccgtacccttaagactagcctgtcctctagcaaatgtgaccccaagcacaaggat
tgcctgctgcgggaatttcggaagctgtgtgccatggtggctgaaaatcctagctacaac
acgaagacccagatcatccaggacttcctgcagaaaggctcagcaggagatggtttccac
ggtgatgtgtacctaacagtgaagctgctgctgccgggtgtcattaagagtgtttacaac
ctgaatgataagcagattgtgaagctttttagccgcattttcaactgcaatccagatgac
atggcacgggatctagagcagggtgacgtgtcagagacaatcagagtcttctttgaggag
agcaagtctttccccccagctgccaagagcctcctcaccatccaggaggtggacgaattc
ctcctgcgactctccaggctcaccaaggaggacgagcagcagcaggccctccaggacatc
gcctccaggtgtacagccaatgaccttaagtgcatcatcaggttgatcaaacatgacctg
aagatgaactcaggtgcgaaacacgtgttagatgccctcgaccccaatgcctatgaagcc
ttcaaagcctcacgcaacctgcaggatgtggtggagcgggtccttcgcaacgagcaggag
gtggagaaggagccaggccagaggcgagctctgagcgtccaggcctcgctgatgacgcct
gtgcagcccatgctggccgaggcctgcaagtccatcgagtatgcgatgaagaagtgtccc
aacggcatgttctctgagatcaagtacgatggggagcgagtgcaggtgcataagaacgga
gaccacttcagctacttcagccggagcctcaagcctgtcctgcctcacaaggtggcccac
ttcaaggactacatcccccaggctttccctgggggccacagcatgatcctggactccgaa
gtgctcctgatagacaccagcacaggcaaacctctgccctttgggactctgggagtgcac
aagaaagctgccttccaagaggctaatgtttgcctgtttgtttttgattgtatttacttc
aatgatgtcagcttgatggacaggcctctgtgtgagcggcggaagtttcttcatgacaac
atggttgaaattcccaaccggatcatgttctcagaaatgaagcaagtcaagaaagcttcc
gacttggttgacatgataaaccgggtgatccgtgagggattagaagggctggtgctgaag
gacgtgaagagtacatatgagcctgggaagcggcactggctgaaagtgaagaaggactat
ttgaacgagggggccatggctgacacagctgacctgcttgtccttggggccttctatggg
caagggagcaaaggtggcatgatgtcgatcttcctcatgggctgctatgaccccggcagc
cagaagtggtgcactgtcaccaagtgctcaggtggccacgatgatgcgacgctcgcccgc
ctgcagacagagctggacatggtaaagatcagcaaggaccccagcaagatacccagctgg
ctgaaaatcaacaagatctattatcctgactttatcgtcccagacccaaagaaagctgct
gtgtgggagatcacaggggctgagttctccaaatctgaggtccacacagccgatggcatc
tctatccggttccctcgctgcacccgaatccgtgatgataaggactggaaatctgccact
aacctcccccagctcaaggagctgtaccaactgtccaaggagcgggcagacttcactgta
gtggccagagatgacgggagctccagtgcagggggcagcagtggagagaccgagggcacc
tcggggcctgctgtgtcctcctgcaaggtccccataacctcccccgacaagccctcagcc
agtgccaggaaggcccaaaggaagccgagtaatcccaacagcaaaggcggcaacaagctg
gccgcaaagccttcccctgtgaaagtgggagagaagccgaccacgaagccttctcccgtg
aaggtgggacaaaagcggaaggctccagacgaggccccgtgccaagcaaaggtgctgctg
gacatctttactggggtgcggctctacctaccaccctccacaccagacttcagccggctc
agacgctactttgtggcattcgacggagacctggtgcaggaatttgacatggcctctgcc
acacacgtcctgggcagtggggacaagaacactgaggcccagcaggtctccccagagtgg
atttgggcctgtgtccggaaacggagactggtagctccctgctag
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