Loxodonta africana (African savanna elephant): 100670380
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Entry
100670380 CDS
T04351
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100670380 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100670380 (XAB2)
03041 Spliceosome [BR:
lav03041
]
100670380 (XAB2)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100670380 (XAB2)
Spliceosome [BR:
lav03041
]
Complex B
Other components
Prp19-related factors
100670380 (XAB2)
Complex C
100670380 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
TPR_19
Suf
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
TPR_MalT
TPR_7
Motif
Other DBs
NCBI-GeneID:
100670380
NCBI-ProteinID:
XP_010599172
LinkDB
All DBs
Position
Unknown
AA seq
810 aa
AA seq
DB search
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNPFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETTSELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCECGELELRHENYDQALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAVFLEEHKYFEESFKA
YERGISLFKXPNVSDIWSTYLTKFIHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGV
THTRGIYQKAIEVLSDEHARDMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQ
TWKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSG
MDDMKLLEQRAEQLAAEAERDQPPRAQSKILFVRSDASREELAELAQQVNPEEIELGEDE
DEDEMDLEPNEVRLEQQSVPAAVFGSLKDD
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgactgtcgcggcccgagcggccggatcttgttttcgaggaagag
gacctcccctacgaggaggagatcatgcggaacccattctccgtcaaatgctggctccgg
tacatcgagttcaaacagggtgccccgaagcccaggctcaatcaattgtatgagcgggca
ctcaagctgctgccctgcagctacaagctctggtatcgctacctgaaggcgcgccgggca
caggtgaagcatcgctgtgtgaccgaccccgcctacgaagacgtgaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacggctgtggctagattactgccagttcctg
atggaccagggccgcgtcacacacacccgccgcacctttgaccgtgctctccgggcgctg
cctatcacacagcactcgcggatctggcctctgtacctgcgcttcctgcgctcacacccg
ctgcccgagaccgctgtgcgaggctaccggcgcttcctcaagctgagccctgagagcgca
gaggagtacatcgagtacctcaagtcaagcgaccggctagacgaggccgcacagcgcctg
gccaccgtggtcaacgacgaacgcttcgtgtccaaggccggcaagtccaactaccagctg
tggcacgagctatgtgacctcatctctcagaacccggacaaggtgcagtccctcaatgtg
gacgccatcatccgtgggggcctcactcgcttcacggaccagctgggcaaactctggtgc
tcgctggctgactactacatccgcagtggccacttcgagaaggctcgggatgtgtatgag
gaggccatacggaccgtgatgacggtgcgggacttcacccaggtattcgacagctacgcc
cagttcgaggagagcatgattgcggctaagatggagaccacctcggagctggggcgcgaa
gaggaagatgatgtggacctggagctgcgcctggctcgctttgagcagctcatcagccgg
cggcccctgctgctcaacagtgtcctgctgcgccagaacccccaccacgtgcacgagtgg
cacaagcgcgtggccctgcaccagggccgtccccgggagatcatcaacacatacacagag
gctgtgcagacggtggaccccttcaaggccacaggcaagccccacactctgtgggtcgcc
tttgccaagttttacgaggacaatgggcagctggacgatgcccgcgtcatcctggagaaa
gccaccaaggtgaacttcaagcaggtggacgacctggcaagcgtgtggtgcgagtgcggt
gagctggagctccggcacgagaactacgaccaggctctgcggctgctacggaaagcgacg
gcactgcccgcccgccgggccgagtacttcgatggctcggagcccgtgcagaaccgcgtg
tacaagtccctgaaggtgtggtccatgctcgccgacctggaggagagcctcggcaccttc
cagtccaccaaggctgtgtacgaccgcatcctggacctgcgcatcgccacaccccagatc
gtcatcaactacgctgtgttcctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgcggcatctcgctgttcaagntgcccaatgtatccgacatctggagcacctac
ctgaccaaattcatccacgccatggctgtgtatgagcgcgccacccgggccgtggagcct
gcccagcagtacgacatgttcaacatctacatcaagcgggctgctgagatctatggcgtc
acccacacccgcggcatctaccagaaggccatcgaggtgctgtcggatgaacacgcccgg
gacatgtgcctgcgctttgccgacatggagtgcaagcttggagagatcgaccgcgcccgc
gccatctacagcttctgctcccagatctgcgacccccggacgaccggggcgttctggcaa
acgtggaaggactttgaggtccggcatggcaacgaggacacaatccgggagatgctgcgg
atccggcgcagcgtgcaggccacctacaacacgcaggtcaacttcatggcctcacagatg
ctcaaggtgtcgggcagcgccacaggcactgtgtcagacctggcccctgggcagagtggc
atggatgacatgaagctgctggagcaacgggcagagcagctggcggctgaggcagagcgg
gaccagccacctcgggcccagagcaagatcctctttgtgaggagtgacgcctcccgtgag
gagctggcggagctggcccagcaggtcaaccccgaggagattgagctgggggaggacgag
gacgaggatgagatggacctggagcccaacgaggtacggctagagcagcagagcgtgccg
gccgctgtgttcgggagcctgaaggacgactag
DBGET
integrated database retrieval system
