Loxodonta africana (African savanna elephant): 100671006
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Entry
100671006 CDS
T04351
Symbol
PABPC5
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav03015
mRNA surveillance pathway
lav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100671006 (PABPC5)
09123 Folding, sorting and degradation
03018 RNA degradation
100671006 (PABPC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100671006 (PABPC5)
03041 Spliceosome [BR:
lav03041
]
100671006 (PABPC5)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100671006 (PABPC5)
mRNA cycle factors
Stress granule specific factors
100671006 (PABPC5)
Spliceosome [BR:
lav03041
]
Complex C
Other components
Complex C specific factors
100671006 (PABPC5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_MUD2_C
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
100671006
NCBI-ProteinID:
XP_023407171
LinkDB
All DBs
Position
Unknown
AA seq
382 aa
AA seq
DB search
MGSGEPNPAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVKNFGDDMDDEKLKGLFSEYGPTESVKVIRDVSGKSKG
FGFVRYETHEAAKKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRFERLRLKEKSRPP
GVPIYIKNLDETIDDEKLKEEFSSFGSVSRAKVMMEVGQGKGFGVVCFSSFEEATKAVDE
MNGRVVGSKPLHVTLGQARRRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atggggagtggggagcctaatcctgctggcaagaaaaagaagtacctcaaagctgccctg
tacgtgggtgacttggacccagacgtcaccgaggacatgctatataagaagttcaggcct
gctggtcctctgcgcttcacacgaatctgtcgtgacccagtgacccgcagtcccctgggc
tatggctatgttaactttcgttttcctgcggatgctgagtgggcactcaacaccatgaat
tttgatttaattaatggcaaaccatttcgcctcatgtggtctcagccagatgaccgctta
agaaagtctggagttggaaacatcttcatcaaaaacctggacaaatccatagacaatagg
gcccttttttacttattttctgcttttgggaacattctctcctgcaaagtagtctgcgat
gacaacggctctaaaggctatgcctacgtacacttcgacagcctggccgctgccaacagg
gcgatctggcacatgaatggagtgcggctcaacaaccgccaggtgtatgttggccggttc
aaattcccggaagagcgggccgctgaagtcagaacccgggatagagcaactttcaccaat
gtgttcgttaaaaattttggggacgacatggatgacgaaaaactgaagggacttttcagt
gaatatgggccaactgagagtgttaaagtgataagagatgtcagtgggaaatccaaaggc
tttggatttgtgagatatgagacacacgaggctgccaaaaaagctgtgctagaccttcat
ggaaagtcaattgatgggaaagcgctgtatgtaggacgagcacagaagaaaattgaacgc
ctggctgagttaaggcggagatttgaacggctgagattaaaggaaaaaagtcggcctcca
ggggtgcctatctatattaagaacctagatgagaccattgatgatgaaaaactgaaggaa
gagttttcttcctttggatcagttagccgggccaaggtgatgatggaagtggggcaaggc
aaagggtttggtgttgtatgcttctcctcttttgaagaggctaccaaagcagtggatgag
atgaatggtcgcgtagtgggctccaagcccctgcatgtcaccttgggccaggccagacgc
aggtggtga
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