Loxodonta africana (African savanna elephant): 100671301
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Entry
100671301 CDS
T04351
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
KO
K11101
patched 2
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04340
Hedgehog signaling pathway
lav05200
Pathways in cancer
lav05217
Basal cell carcinoma
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
100671301 (PTCH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100671301 (PTCH2)
09162 Cancer: specific types
05217 Basal cell carcinoma
100671301 (PTCH2)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
100671301
NCBI-ProteinID:
XP_003415607
LinkDB
All DBs
Position
Unknown
AA seq
1206 aa
AA seq
DB search
MARPPSLGELPPSYTPPARTSAPQTLAGSLKAPLWLRAYFQGLLFSLGCGIQRHCGKVLF
LGLLAFGALALGLRVAIIETDLEQLWVEVGSRVSQELHYTKEKLGEEAAYTSQMLIQTAR
QEGESVLTPEALGLHLQAALTASKVQVSLYGKSWDLNKICYKSGVPVIENGMIERMIEKL
FPCVILTPLDCFWEGAKLQGGSAYLPGHPDIQWTNLDPKQLLEELGPFASLESFRELLDK
AQVGQAYVGRPCLHPDDLHCPPSAPNYHSRQAPNVAQELSGGCHGFSHKFMRWQEELLLG
GMTRDPRGQLLRAEALQSTFLLMSPRQLYEHFRGDYQTHDIGWGEEQASTVLQAWQRRFV
QLAQEALPENATQQIHAFSSTTLDDILHAFSEVSAARVVGGYLLMLAYACVTMLRWDCAQ
SQGAVGLAGVLLVALAVASGLGLCALLGLAFNAATTQVLPFLALGIGVDDIFLLAHAFTE
APPGTPLQERMGECLQRMGTSVTLTSVNNMVAFFMAALIPIPALRAFSLQAAIVVGCNFA
AVMLVFPAILSMDLHRRHCQRLDVLCCFPSPCSARVIQILPEDLGDRTVPVGIAHLTATV
QAFTHCDASSQHVVTILPPQTHLAPPHSDPLDSQLFSPGGSTRDLLDQEEGTRQKAACRS
LPCARWNLAHFARYQFSPLLLQSHTKALVLLLFGALLGLSLYGATLVQDGLALTDVVPRG
TKEHAFLSAQLRYFSLYEVALVTQGGFDYTHSQRALFDLHQHFSSLKAVLPPPATQVPRT
WLHYYRNWLQGERREDCREGAAGRXXRHSYRNGSEDGALAYKLLIQTGDAQEPLDFSQLT
TRKLVDEEGLIPPELFYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENFRIP
AAQPLEFAQFPFLLRGLQKTADFVEAIEGARAACAEAGRAGVRAYPSGSPFLFWEQYLGL
RRCFLLAVCILLVCTFLVCALLLLNPWVAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVV
ILVASVGIGVEFTVHVALSFLTAQGSQNLRAAQALEHTFAPVTDGAVSTLLGLLMLAGSN
FDFIVRYFFIVLTVLTLLGLLHGLVLLPVLLSILGPPPEVVQMYKESPEVLSPPAPQGGL
RWGAPPTLTQGFARVTTSMTVALHAPPLPGAYIHPTSEDPAWSPAATPAASAPDNLSSRG
PCAATG
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggctcggccgccgtcccttggggagctgccgcccagctacacacccccagctcgaaca
tcggctccccagaccctagctgggagcctgaaggctcctctctggcttcgcgcttacttc
cagggactgctcttctctctgggctgcgggatccagagacactgtggcaaagtgctcttc
ctgggactgttggcgtttggggccctggcactgggtctccgtgtggccatcattgagaca
gacctcgagcagctatgggtagaagtgggcagccgggtgagccaggagctgcactacacc
aaggaaaagctgggggaggaggctgcatacacctcccagatgctgatacagactgcacgc
caggaaggggagagtgtcctcacaccggaggcgcttggcctccacctccaggcagccctc
acagccagcaaagtgcaagtctcgctctatggaaagtcctgggatttgaacaaaatctgc
tacaagtcaggagttcccgtcattgaaaatggaatgattgagcggatgatcgagaagctg
tttccgtgtgtgatccttacccccctcgactgcttctgggagggagccaagctccaaggg
ggctctgcttatctgccgggccacccggatatccagtggaccaacctggatccaaagcag
ctgctggaggagctaggcccctttgcctcccttgagagcttccgggagctgctagacaag
gcgcaggtgggccaggcctatgtggggcggccatgcctgcaccccgatgacctccactgc
ccacctagtgcccccaactatcacagcaggcaggctcccaatgtggctcaggagctgagc
gggggctgccatggcttctcccacaagttcatgcgctggcaggaggaattgctgctaggg
ggcatgaccagagacccccgaggacagctgctgagggcagaggccctgcagagcaccttc
ctgttgatgagtccccgccagctgtatgagcacttccggggcgactaccagacgcacgac
attggctggggtgaggagcaggccagcaccgtgctgcaagcctggcagcggcgctttgtg
cagctggcccaggaggccctgcctgagaacgcaacccagcagatccacgccttctcctcc
accaccctggatgacatcttgcatgccttctcagaagtcagtgccgcccgtgtggtggga
ggctatctgcttatgctggcgtatgcctgcgtgacaatgctgcggtgggactgtgctcag
tcccagggtgccgtgggcctggccggggtgctgctggtggccctggccgtggcctcaggc
ctcgggctctgtgcactgctcggcctcgccttcaatgctgccaccacccaggtgctgcct
ttcttggcactgggcatcggcgtggatgacatattcctgctggcacatgccttcacagag
gctccacctggcacccctctccaggagcgcatgggcgagtgtctgcagcgcatgggcacc
agcgtcacactcacatccgtcaacaacatggtcgccttctttatggcggccctaataccc
atccctgcactgcgggccttctccctgcaggcagccatagtggttggctgcaactttgca
gccgtgatgcttgtcttcccagccatcctcagcatggacctgcaccggcgccactgccag
cgccttgatgtgctctgctgctttcctagcccctgctctgctcgagtgattcagattctg
cccgaggacctgggggataggacggtcccagtgggcattgcccacctgactgccacagtt
caagcctttacccactgtgatgccagcagccagcatgtggtcaccatcctgcctccccaa
acccacctggcacccccacattctgacccattggactctcagctcttcagcccaggaggg
tccacacgggaccttctagaccaggaggaggggacaaggcagaaagcggcctgcaggtcc
ttgccctgtgctcgctggaatcttgcccattttgcccgctatcagttctcacccttgttg
ctacagtcacacaccaaggccctggtgctgttgctctttggggctcttctgggcctgagc
ctctacggagcaaccttggtgcaggatggcctggccctgactgacgtggtgcctcggggc
accaaggagcatgccttcctgagcgcccagctcaggtacttctccctgtacgaggtagcc
ctggtgacccagggtggcttcgactacacccactcccaacgcgccctctttgatctacac
cagcacttcagttccctcaaggccgtgctacccccaccagccacccaagtgccccgcacc
tggctgcactattaccgcaactggctacagggtgagaggcgagaggactgcagggagggt
gctgcagggagannnncccgccactcctaccgcaatggctcagaggatggggccctggcc
tacaagctactcatccagaccggggatgcccaagagcccctggatttcagccagctgacc
acaaggaagctggtggatgaggagggcctgattcccccggagctcttctacatggggctg
actgtgtgggtgagcagtgaccccctgggtctggcagcctcgcaggccaacttctaccca
ccaccccctgaatggctgcatgacaagtacgacaccacgggggagaactttcgcatccca
gccgcccagcccctggagttcgcccagttccccttcctactacgcggcctccagaagaca
gcggactttgtggaggccattgagggggcccgagcagcctgcgcggaggcaggccgggcc
ggggtgcgcgcctaccctagtggctcccccttcctcttctgggagcagtatctgggcctc
cggcgctgcttcctgctggccgtctgcatcctgctggtgtgcactttcctcgtgtgtgcc
ctgctgctactcaacccctgggtggctggcctcatagtgctggtcctggcaatgatgact
gtggagctctttggcatcatgggcttcctgggcatcaagctgagtgccatccccgtggtg
atcctcgtggcctctgtaggcattggtgtcgagttcacggtccatgtggccctgagcttc
ctgaccgcccagggaagccagaacttgcgggccgcccaggccttggagcacacgtttgcc
cccgtgaccgatggtgctgtctctacattgctgggtctgctgatgcttgctggctccaac
tttgacttcatcgtaaggtacttcttcattgtgctgacggtactcaccctcctgggcctc
ctccatgggcttgtgctgctgccggtgctgctgtccatcctgggcccgccaccagaggtg
gtacagatgtacaaggagagcccagaggttctgagcccgccagctccacaaggagggctc
aggtggggggcacctcccaccctaacccagggctttgccagagtgactacctccatgacc
gtggccctacacgcgcccccgctgcctggtgcctacatccatcccacctctgaggatcct
gcttggtcccctgctgctaccccagctgccagtgcccctgacaacctcagttctaggggg
ccgtgtgcagctactgggtga
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