Loxodonta africana (African savanna elephant): 100671590
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Entry
100671590 CDS
T04351
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X2
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
lav
Loxodonta africana (African savanna elephant)
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lav03019
]
100671590 (TNRC6C)
03036 Chromosome and associated proteins [BR:
lav03036
]
100671590 (TNRC6C)
Messenger RNA biogenesis [BR:
lav03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100671590 (TNRC6C)
Chromosome and associated proteins [BR:
lav03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100671590 (TNRC6C)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
UBA_HERC2
DUF4718
RRM_ACIN1
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
100671590
NCBI-ProteinID:
XP_003417280
LinkDB
All DBs
Position
Unknown
AA seq
1955 aa
AA seq
DB search
MDIVLIPLFFIFDREKEQKTQEEERLMEEKKKKKQEEKKKKEGAQKKAADQKTKVPEPTK
TCPSQPQPAGTSTGTSTSTVSSSSNGKRASASGQQPAASRYLPREVPPRFRQQEQKQLLK
RGQPLPTGTLTSVSPAQGAGPAGVSPPPLSGAGVQHHPSKLQPDLSHSGLADHYESPHWG
QQPTYRSEANCSWDKVIVDRTDKEAGPSITGAETESASECTTDTDSASYCGSENRSMATG
SAQGNFTGHTKKTNGNNGTSGTLVHSTSNQSALGAGGANGNGNSARVWGVATGSSSVLAH
CSIGGGDGKVDNMIGDGGSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVATGNPS
SICSPVSAIGQNMGNQNGNPTGTLGAWGNLLPQESTDPQTSTSQNVSFSVQPQNLNTDGP
NNTNPMNSSPNPINAMQTNGLPNWGMAVGMGAIIPPHLQGLPGANGSSVSQVSGGGGEGI
SSSVWGLSPGNPATGNSNSGFNQGNGDTVNSALSAKQNGSNSAVQKEGNGGNAWDSGPPA
GPGILAWGRGSGNSGVGNIHSGAWGHPSRSISNGVNGEWGKHPNQHSSNDISGKGSTGWD
SPSVSSQNPAVPPGSEQMNSWAKAASSGTATSEGSNDGSGHHNEGSTGKEGAGECRRRDK
GVVDQGHIQLPRNDLDPRVLSNTGWGQTPVKQNTAWEFEESPRSERKTDNGTEAWGCAAT
QPSDSGGKNDGSITNSTNTSSVSGWVSSPPAAVPANTGWGDSNNKAPNGPGVWGDSISST
AVNNAAAAKSGHAWSGTVSQEDKSPTWGEPQKPKSQNWGDGQKSGPAWSAGGSDWGDSSS
VLGHLGDGKKNGSGWDADNSRSGPGWNDAARAGTSGWGNGTNAKVNPGTNWGESLKPGPQ
QNWANKPQDINVSNWGGAASVKQTGTGWIGGPVPVKQKDSSEATGWEEPSPPSIRRKMEI
DDGTSAWGDPSNYNNKTVNMWDRNNPVIQSSTTTNTTTTTTTNTNMVETPPSHQANTQLN
RSPLLGSVSSGWGEMPNVHSKAENSWGEPPSPSTLVDNGTAAWGKPPSSGSGWGDHPTEP
AVTYGRAGAPAAAPALCKPASKSMQEGWGSGGDEMNLSASQWEDEEGDMWGNAASQDSTS
SCSSWGNAPKKGLQKGMKTSGKQDEAWILTRLVKQLTDMGFPREPAEEALKSNSMNLDQA
MSALLEKKVDVDKRGLGVTDYNGMVTKPLGCRPPISKESSVDRPTFLDKDGGLVEETTPS
PFLPSPSLKLPLSNSALPGQTLGGIASGLGVQNLNSSRQIPSGNLGMFGNSGAAQARTMQ
QPQQPPAQPLSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTML
NQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALL
VKQPPPPPHLSLHPSAGKSAMDSFPPHPQAPGLPDLQTKEQPSSPSTFAPYPLAGLNPNM
NVNSMDVTGGLSVKDPSQSQSRLPQWTHPNAVDNLPSAASPLDQNPSKHGAIPGALSIGP
PAKSSIDDSYSRYDLIQNSESPASPPVAVTHSWSRAKSDSDKISNGSSISWPPEFHPGVP
WKGLQNIDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGSSPPSSQNATLPSSSAWP
LSASGYSSSLSSIASAPSIAGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTTAPTRPP
PGLANPKPSSTWGASPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCL
QHGPLVTFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQ
GQALPPTSSWQSSSGTSQTRLGASGSAHGLVRSDTGHWSAPCLGSKGSSDLLWSGVPQYS
SSLWGPPSADDGRVIGSPTPLNTLLPGDLLSGESM
NT seq
5868 nt
NT seq
+upstream
nt +downstream
nt
atggacatcgtactaataccacttttctttatattcgacagggagaaagaacaaaaaaca
caagaagaggaacgtttgatggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaag
aaggaaggtgctcagaaaaaggctgctgatcaaaaaaccaaagtgccagaacctactaag
acctgtccaagccagccccaacctgccggtaccagtaccggtacttctaccagcactgtc
tccagcagcagcaatggcaaacgtgcatctgccagtggccagcagccagctgcgtcccgt
tacctgcctcgcgaggtgcctccacgcttccgccagcaagaacagaagcagctattgaag
agaggccagccattgccgacagggactctgaccagtgtgagcccagcccagggcgctggg
ccagcaggagtcagccctcctcctctctctggggccggtgtgcagcatcatcccagcaag
ctccagccagatctcagccacagtggattggcagatcattatgaaagtccccactgggga
cagcagcctacttacagaagcgaagccaactgcagctgggataaagtgatagtagacagg
actgacaaggaggcggggccttccatcacaggagccgagacggagtctgcctcagaatgt
accacagacactgactctgcctcctactgtggctcggagaacaggagcatggctacaggg
agtgcccagggcaacttcactggacatacaaagaagacaaatggcaataatggtaccagt
ggcacactcgtccacagcacttcgaatcagagtgcccttggagcaggtggagccaacggc
aatgggaattcagcccgagtgtggggtgtagccacaggctccagctctgtcctcgctcac
tgctccattggtggtggggatggaaaagtggacaacatgattggagatggtggaagtcag
aactgctggggtgcttccaactccaatgctggcattaatcttaaccttaatcctaatgct
aacccagctgcctggcctgtacttggacatgaaggaactgtggcaacaggcaacccttcc
agtatttgcagtccagtcagtgccataggtcaaaacatgggcaaccagaatgggaaccca
acaggcactttaggtgcttggggaaacttgctgccgcaagagagcacagacccacaaacg
tccacttctcagaatgtgtctttcagcgtacaacctcagaaccttaacactgatggacca
aataacactaaccccatgaactcttcaccaaaccctatcaatgcaatgcagacaaacgga
ctgccaaactgggggatggctgttggtatgggagccatcatcccgccccacctgcaaggc
cttcctggtgctaatggatcatcagtttctcaagtcagtgggggcggtggtgaaggaata
agcagttctgtgtggggactgtccccaggtaaccctgccacaggaaatagcaattctggg
ttcaatcaggggaatggagacactgtgaactcagcattaagtgctaaacaaaatggatcc
aacagtgctgtgcagaaagaagggaatggaggaaatgcttgggattcgggaccacctgct
ggtcctggaatacttgcttggggcaggggcagtggcaacagtggtgttggtaatatccat
tcgggagcttggggccaccccagccgcagcatctccaatggtgtgaatggggaatgggga
aagcacccaaaccagcattccagtaatgacatcagtgggaaaggatcaacagggtgggac
agtcctagtgttagcagccagaatcctgccgtgccacctggcagtgaacagatgaactct
tgggccaaagctgcatcttctggaactgccacaagcgaaggaagcaatgacggttctggc
catcacaatgaaggaagcaccgggaaggaaggagccggagaatgccgcaggcgagataaa
ggggttgtagaccaagggcacatccagttgccgaggaatgatcttgaccccagagtcctg
tctaacactggttggggacagactcctgtaaagcagaacactgcctgggaatttgaagaa
tccccgaggtctgagaggaaaactgacaacgggacagaggcctggggttgtgcagctact
cagccttcagactcagggggcaagaacgatgggtccatcacgaacagtacaaatacctct
tcagtatctgggtgggtcagctcaccccctgctgctgtgccagcaaacacaggttgggga
gacagcaacaacaaagcgccaaacggcccaggggtgtggggggactcaataagctctact
gctgttaataatgctgctgccgccaagagtggccatgcttggagtgggaccgtcagtcag
gaggacaagtcacctacatggggtgagcctcagaaacccaaatctcaaaactggggagat
ggacagaaatccggtcctgcctggagcgcaggagggagcgactggggagactcatcgtct
gtccttggtcacctgggggatgggaagaaaaatggatctggctgggatgctgacaacagt
agatcagggccgggttggaacgatgctgcgagggctgggaccagcggatggggcaatggc
acaaatgcaaaggtcaatccaggtacaaactggggggagtctttaaagcctggcccccaa
cagaactgggctaacaaaccccaagacatcaatgtgagtaactggggaggagctgcttct
gttaaacagacaggaacagggtggatcggagggccagtaccagtcaagcagaaggacagc
agtgaggccactggctgggaagaaccttctccaccctccattcgacgcaaaatggaaatt
gatgatggtacctcggcttggggtgacccaagcaactacaacaataaaactgtaaacatg
tgggatagaaacaacccagttatccagagcagtaccacaaccaacaccaccaccaccacc
accaccaacacaaacatggtggagacaccaccgtcacaccaggccaacactcagctcaac
cgatcaccactgcttggttcagtttcatcaggctggggagaaatgcctaatgttcattca
aaggctgaaaattcttggggagagccgccctccccttctaccctggtggacaacggcacg
gcagcatgggggaagccccccagcagtggcagcggatggggtgaccaccccactgagcca
gcagtgacctatgggagagctggtgcccctgccgctgccccagccctgtgcaaaccagct
tcaaaatctatgcaagaaggctggggcagcggtggggacgagatgaacctcagcgccagt
cagtgggaagatgaagaaggagacatgtggggtaacgctgcttcccaagacagcacctcc
tcctgcagctcctggggcaatgcccccaaaaaaggacttcaaaagggcatgaagacatcc
ggcaagcaggatgaggcctggatcctgacgcggctcgtcaaacaactcaccgacatgggc
ttcccgagagaaccagctgaagaggccttgaagagcaacagtatgaatctcgatcaggcc
atgagcgctctgctggaaaagaaggtggacgtggacaagcgtggactgggagtgactgac
tataatggaatggtcaccaagcccctcggctgccgcccaccaatctccaaagagtcttcc
gtggaccgccccacctttcttgacaaggacggcggcctcgtggaagagaccactccttca
ccatttttgccttcaccaagcctgaagctccccctttcaaacagcgcactccctggtcag
accctgggtgggattgcctcagggctgggcgtgcaaaacttgaattcttctcgacagata
ccgagtggcaatctgggtatgtttggcaatagcggagcagcacaagccaggaccatgcaa
cagccgcagcaaccgccagctcagcctctcagctcctcccagcccagtctccgtgctcaa
gtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaaaac
attggtctcaaccctgcactattgacctcgccaattaaccctcagcatatgacgatgttg
aaccagctctatcagctgcagctggcataccaacgtttacagatccagcagcagatgtta
caggcccagcgtaatgtttccggacccatgagacagcaggagcagcaagttgcgcgcaca
atcactaacctgcagcagcagatccagcagcaccagcgccagctggcccaggccctgctt
gtgaagcagccaccacccccgccgcacctgtccctgcacccctctgcaggcaaatcggcc
atggacagcttccccccccatccccaggcgcccggcctccccgacctgcagaccaaagaa
cagccgtcttcacccagcaccttcgctccttaccctctcgccggactgaacccaaacatg
aatgtcaacagcatggatgtcacgggtggcctgtcggtgaaggacccatcgcagtcgcag
tcacgcctgcctcagtggactcaccccaatgccgtggataacctacccagtgccgcttct
cctctggatcagaaccctagcaagcatggtgctatccctggagctctgagcatcgggcct
ccagccaaatcctccattgacgactcctacagccggtacgatttaatccagaacagtgag
tcaccagccagtcctcctgtagctgttacccacagctggtcacgtgccaaatctgacagt
gataaaatctcaaacggctccagcatcagctggcccccagaattccatcctggagtaccg
tggaaaggactacagaacatcgatcccgaaaacgaccctgatgtcactcccggcagtgtc
cccacggggcctacaattaacaccaccatccaggacgttaaccgctacctcctcaaaagt
ggagggtcctccccaccgtcatctcagaatgccacgctgccttcctccagtgcctggccg
ctcagtgcctccggctacagtagctctttgagcagcattgcatccgcacctagcattgca
ggtaagctgtcagacattaagtccacgtggtcctctggcccagcctcccacacccaagcc
tccctgtctcatgaactgtggaaggtgcccagaaacactactgcgcccacacggccgcct
ccaggcttagccaatcccaagccttcctccacctggggagccagccccctcggctggacc
agctcctactcctcaggttctgcttggagtactgacacctcaggaaggaccagcagctgg
ctcgttcttcgaaacctcacaccccagatcgacggctccacgctgcggacgctgtgcctg
cagcacggtcctcttgtcacattccacctgaacctgacgcaggggaacgccgtggtccgc
tacagctccaaggaggaagctgccaaggcccagaagtccctgcacatgtgcgtgctgggg
aacaccaccatcctggccgagttcgctggcgaggaagaggtgaaccgcttcttagcgcag
ggccaagcactgccccccacctccagctggcagtccagctcggggaccagccagacgagg
ctgggtgcctcaggcagtgctcacggcctggtgcgcagcgacactggccactggagcgcc
ccgtgcctgggcagcaaagggagcagcgacctgctgtggagtggggtgccccagtactca
agcagcctgtggggccctccaagcgctgacgatggcagggtgatcggcagccccaccccg
ctcaacaccctgcttcctggagacctcctcagcggggagtccatgtaa
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integrated database retrieval system
