Loxodonta africana (African savanna elephant): 100671952
Help
Entry
100671952 CDS
T04351
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
lav
Loxodonta africana (African savanna elephant)
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lav03036
]
100671952 (CHD5)
Chromosome and associated proteins [BR:
lav03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100671952 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100671952
NCBI-ProteinID:
XP_010591452
LinkDB
All DBs
Position
Unknown
AA seq
1941 aa
AA seq
DB search
MRQSNSLLLLILPEEEDGGLEGFDDFFPEEPVSLPKKKKSKKLKENKSKGKRKKKEGSND
ELSENEEDLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDEDDHDDGGLKEPKS
SGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWR
EFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLAISPQQAPQPVPIRKAKTKEGKGPGVR
KKIKGSKDGKKKGKGKKVAGLKFRFGGLSNKRKKGSSSEEDEREESDFDSASIHSSSVRS
ECSAALGKKSKRRRKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPE
LEKAPEGKWSCPHCEKEGIQWEPKDEEEEEEEGGCEEEEDDHMEFCRVCKDGGELLCCDA
CPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMVGLPGPDV
EPSVPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKNDMDEPPP
FDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRVLNHSFDKKGDVHYLIK
WKDLPYDQCTWEIDDIDIPYYDNLKHAYWGHRELMLGEDARLPKRLIKKSKKLKDDKQEK
PPETPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTV
QTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN
EFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLK
NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK
EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNS
KGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKML
KKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQ
FCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRAS
VEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGMMSQGQ
RPITPIPDVQSSKGGTLPASVKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLDRNQDAT
DDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEKLLRHHYEQQQE
DLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERPEGQSGR
RQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNSIMRWGMPPQDAFNSHWLV
RDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKK
VQEFEHVNGKYSTPDLIPEGPEGKKPGEVISSDPNTPVPASPAHIPPAPLGLPEKMEAQL
GYIDEKESGMQKPKKPLEIQTLPTPLDRVEGEEKQESSESKERAREERLEETEKAQSSPE
QLPKEEVLPEKEKILDKLELNLIHSRGDGSDFRPDDTKAEEKESIETQQNGDKEEDEEGK
KEDKNGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDYWLLAGIVTHGY
ARWQDIQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLN
MTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKA
DVTRLPSMLSRIPPVAARLQMSERSILSRLTNRAGDPTIQQGAFGSSQMYNNNFGPNFRG
PGPGGIVNYNQMPLGPYVTDI
NT seq
5826 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagagtaactccctcctccttttgattctcccagaagaagaagatggtggcctt
gaaggcttcgatgactttttccctgaggagccggtgagcctccccaagaagaagaaatct
aagaagctcaaggaaaacaagtccaaaggaaagcggaagaagaaagaggggagcaatgat
gagctgtcggaaaatgaagaggacctggaagagaagtcagagagtgaaggtagtgactac
tctcctaataaaaagaagaagaagaaactcaaggacaagaaggagaaaaaagccaagcga
aagaagaaggatgatgacgaagatgatcatgatgatggaggcttaaaggagcccaagtcc
tcggggcagctcatggccgagtggggcctggatgacgtggactacctgttctctgaggag
gactaccacacgctaaccaactacaaagccttcagccagttcctcaggccactcatcgcc
aagaagaacccgaagatccccatgtccaaaatgatgactgtcctgggtgccaagtggcgg
gagttcagtgccaacaaccccttcaagggcagctcagcggcggcagcggcggccgcggtg
gctgcggcggtagagacggtcaccattgccccccctctggccatcagtccccagcaggca
ccccagccagtgcccatccgcaaggccaagaccaaggagggcaaggggcctggagtgagg
aagaagatcaaaggctccaaagatgggaaaaaaaagggcaaggggaaaaaagtggccggg
ctcaagttccgctttggagggctcagcaacaagaggaagaaagggtcctcgagcgaggag
gatgagcgggaggagtcggattttgacagtgcaagcatccacagttcctctgtgcgctcc
gagtgctccgcagccctggggaagaagagcaagaggaggcgcaagaagaagaggattgat
gatggtgatggctacgagaccgaccaccaggactactgcgaggtgtgccagcagggtggg
gagatcatcctgtgtgacacctgcccaagggcttaccacctcgtttgcctcgacccggag
ctcgagaaggcccccgagggcaagtggagttgcccccactgtgagaaggaggggatccag
tgggagccgaaagacgaggaggaggaggaggaggagggcggctgcgaggaggaggaagac
gaccacatggagttctgccgcgtgtgcaaggacggcggcgagctgctctgctgcgacgcc
tgcccgtcctcctaccacctgcactgtctgaacccgccgctgcccgagatcccaaacggt
gaatggctctgcccgcgctgtacttgtccccccttgaagggcaaagtgcagcggatctta
cactggaggtggacagagcccccagcccctttcatggtggggttgccggggcccgacgtg
gagcccagcgtccctccgcccaagcccctagagggcatcccagagagagagttctttgtc
aagtgggctgggctctcctactggcactgctcctgggtgaaggagctgcagctggagctg
taccatacagtgatgtatcgcaactaccaaagaaagaatgacatggatgagccaccgccc
ttcgactatggctctggtgacgaggatggcaagagcgagaagaggaagaacaaggatcct
ctctatgccaagatggaggagcgcttctaccgctatggcatcaagcccgagtggatgatg
atccaccgcgtcctgaaccacagctttgacaaaaagggggacgtccactacttgatcaag
tggaaagacctgccttatgaccaatgtacctgggagattgatgacatcgacatcccctac
tacgacaacctgaaacacgcttactggggccacagggagctcatgctgggagaagatgcc
aggctgcctaagaggctgatcaagaagagcaaaaagctgaaggatgataaacaggagaag
ccgccggagacccccatcgtggatcccacggtcaagtttgacaagcagccatggtacatc
gactccaccggcggcacactgcacccctaccagctggagggcctcaactggctgcgtttc
tcatgggcccagggcaccgataccatcctggccgatgagatggggctgggcaagaccgtg
cagaccatcgtcttcctctactccctgtacaaggagggacactccaaagggccctacctg
gtcagtgcacccctgtccaccatcattaactgggagcgtgagttcgagatgtgggcaccc
gacttctacgtggtcacctacacgggggacaaggagagccgctctgtgatccgcgagaat
gagttttcctttgaggacaacgcgattcggagtgggaagaaggtgttccgcatgaagaaa
gaagtgcagatcaagttccacgtgctgctcacctcctatgagctcatcaccattgaccag
gccatcctgggctccatcgagtgggcctgcctggtggtggatgaggcccatcggcttaag
aacaaccagtccaagttcttcagggtcttgaacagctacaagatcgactataagctgctg
ctgacggggaccccacttcagaacaacctggaggagctcttccatcttctcaacttcctg
actccggagaggttcaacaacctggagggcttcctggaggagtttgctgacatctccaag
gaagaccagatcaagaagctgcatgacctgctgggcccacacatgctgaggcggctcaag
gctgatgtgttcaagaacatgccggccaagactgaactgattgtgcgcgtggagctgagc
cagatgcagaagaagtactacaagttcatcctcacacggaactttgaagcactgaactcc
aaggggggcgggaaccaggtgtcactgctcaacatcatgatggacctgaagaaatgttgc
aaccacccctacctcttccccgtggccgccgtggaggcgcctgtcttgcccaatggctcc
tatgatggcagctccctggtcaagtcttcagggaagctcatgctgctgcagaagatgctt
aagaagctgcgggatgaagggcatcgcgtgctcatcttctcccagatgaccaagatgctt
gacctcctggaggatttcctggagtatgaaggctacaagtatgagcggatcgatggtggt
atcaccgggggcctccggcaagaggctattgacagattcaatgccccaggagcccagcag
ttctgcttcctcctctcgacccgggcaggtggcctgggcatcaacctggccacggcagac
acggtcatcatctacgactcagactggaatccacacaacgacatccaggccttcagccgc
gcccaccgcattgggcagaacaagaaggtgatgatctaccgcttcgtgacgcgggcttca
gtggaggaacgcatcacccaggtggccaagcgtaagatgatgctgacccacctggtggtg
cggcctggccttggctccaagtcgggctccatgaccaagcaggagctggatgacatcctc
aagttcggcactgaggagctcttcaaggacgacgtggagggcatgatgtctcagggccag
agacccatcactcccatcccggatgtccagtcctccaaagggggcaccctgcctgccagt
gtgaaaaaaaaacacggcagcaccccaccaggtgacaacaaggatgtagaggacagcagt
gtgatccactatgacgacgctgccatttccaagctgctggatcggaaccaggatgccacg
gacgacacggagctacagaacatgaacgagtacctgagttccttcaaggtggcgcagtac
gtggtgcgcgaggaggatggtgtggaggaggtggagcgggagatcataaagcaggaggag
aacgtggaccccgactactgggagaagctgctgcggcaccactacgagcagcagcaggag
gacctggcgcgcaacctgggcaagggcaagcgcatacgcaagcaggtcaactacaacgac
gcctcgcaggaggaccaggagtggcaggatgaactctcggacaaccagtctgaatattcc
atcggttccgaggatgaggatgaagactttgaggagaggccggaggggcagagtggacgg
cgacaatccaggagacagctgaagagtgatcgggacaagcctctgcctccccttcttgct
cgagtcggtggcaacatcgaggtgctgggcttcaacgcccggcagcgcaaggccttcctg
aattccatcatgcgctggggcatgcccccccaggatgccttcaactcccactggctggtg
cgggacctccgagggaagagtgagaaggagtttagagcctatgtgtccctcttcatgcgg
cacctgtgtgagccgggggcggacggcgcggaaaccttcgcagatggcgtgccccgggag
ggcctctcgaggcagcatgtgctcacgcgcatcggggtcatgtcactggttaggaagaag
gttcaggagtttgaacacgtcaatggaaagtacagcaccccagacctgatccctgaggga
cccgagggcaagaagccgggcgaggtcatctcctcggaccctaacacaccagtgcctgcc
agtcctgcccacatcccaccagccccgctgggccttccagaaaaaatggaagcccagctg
ggctacatagatgagaaggagtcagggatgcagaagccaaagaagcccctggaaatccag
accctgccaactcccctggacagagtggagggtgaggagaagcaggagagctcagagagc
aaggagagagcccgagaggagcggctggaggagacagagaaggcccagtcctccccggag
cagctgccgaaagaggaagtgcttccagagaaggagaaaattctggacaagctggagtta
aacttgatccacagcagaggggacggcagtgatttcaggccagatgacaccaaggctgag
gagaaggagtccatcgagactcagcaaaatggtgacaaagaggaggatgaggaggggaag
aaggaggacaagaatgggaaattcaaattcatgttcaacattgcagatgggggcttcaca
gagttgcacacactgtggcagaacgaggagcgtgctgctgtgtcctcgggcaagatatac
gacatctggcaccggcgccatgactactggctgctggcgggcatcgtgacgcatggctat
gctcgctggcaggacatccagaatgacccgagatacatgatcctcaacgagcccttcaag
tctgagatccacaagggcaactacctggagatgaagaacaagttcctggcccgcaggttc
aagctgctggagcaggcgctggtcattgaggagcagctgcggagggccgcatacctcaac
atgacccaggaccccaaccacccagccatggccctcaatgcccgcctggctgaggtggag
tgccttgctgagagccaccagcacctgtccaaggagtccctggctgggaacaagcctgcc
aacgctgtcctgcacaaggtcttgaaccaactggaggagctgctgagtgacatgaaagca
gatgtgacccgcctgccctccatgctgtcccgtatcccgccggtggctgcccgcctccag
atgtcagagcgcagcatcctgagccgcctgaccaaccgtgctggtgaccccaccatccag
cagggcgctttcggctcctcccagatgtacaacaacaactttgggcccaacttccggggc
cctggaccgggagggattgtcaactacaaccagatgcccctggggccctatgtgaccgat
atctag
DBGET
integrated database retrieval system
